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Author SHA1 Message Date
Falko Hofmann
0950eb3518
Merge pull request #251 from phue/cbe_singularity_workaround 
cbe: send SIGUSR2 upon job termination
 2021-10-04 13:24:53 +02:00
James A. Fellows Yates
8e554cd43c
Merge pull request #285 from bbartholdy/master 
Add ALICE cluster to profiles
 2021-09-28 13:57:16 +02:00
Bjørn Peare Bartholdy
e750a6d445
Update conf/alice.config 
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
 2021-09-28 13:34:12 +02:00
James A. Fellows Yates
e8b48416bc
Update docs/alice.md 2021-09-28 12:52:31 +02:00
Bjørn Peare Bartholdy
ad83430632
Update docs/alice.md 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2021-09-28 12:43:54 +02:00
Bjørn Peare Bartholdy
197bd6cfb1
Merge branch 'nf-core:master' into master 2021-09-28 12:09:50 +02:00
bbartholdy
b6ccb46383 add ALICE profile 2021-09-28 12:08:27 +02:00
Alexander Peltzer
09418b5da9
Merge pull request #284 from projectoriented/hasta 
Add Hasta config
 2021-09-28 11:20:16 +02:00
Mei Wu
79a79f7d8d added pipeline-specific config 2021-09-28 10:38:25 +02:00
Mei Wu
735100ed0b updated readme 2021-09-27 16:37:34 +02:00
Mei Wu
c2d74b290a fix md 2021-09-27 16:25:02 +02:00
Mei Wu
a8a2027f70
Merge branch 'master' into hasta 2021-09-27 16:12:23 +02:00
Mei Wu
d3b92bad9d fix lint 2021-09-27 16:11:18 +02:00
Mei Wu
06fac1dcfc initial commit 2021-09-27 16:05:32 +02:00
Mei Wu
ae0adb056f initial commit 2021-09-27 16:05:19 +02:00
Alexander Peltzer
acada75ffe
Merge pull request #282 from aunderwo/master 
Add  longer time for long queue
 2021-09-23 16:17:17 +02:00
Anthony Underwood
3701137740
Merge branch 'nf-core:master' into master 2021-09-23 12:03:38 +01:00
Anthony Underwood
6a970dc4a8
update max time for long queue 2021-09-23 11:59:45 +01:00
Patrick Hüther
1cbe2759c4
fix invalid rapid qos selection 
it only applies to the c partition
 2021-09-22 11:54:27 +02:00
Harshil Patel
f4c240790a
Merge pull request #281 from aunderwo/master 
update sanger profile so that long jobs to be submitted to the long queue
 2021-09-21 20:47:58 +01:00
Anthony Underwood
50df2105fb update long jobs to be submitted to the long queue 2021-09-21 14:42:59 +01:00
Harshil Patel
5068e4806f
Merge pull request #271 from theoportlock/master 
Adds Rosalind config for KCL!
 2021-09-17 13:36:19 +01:00
Harshil Patel
3b95fd9ee3
Update conf/rosalind.config 2021-09-17 13:15:09 +01:00
theoportlock
0fd5265f7b Updates the README 2021-09-17 13:21:38 +02:00
theoportlock
9116a09afe Fixes formatting and ignore_params 2021-09-17 13:21:32 +02:00
Harshil Patel
b8e60c503f
Merge pull request #278 from marcmtk/computerome 
Update computerome.config
 2021-09-15 19:29:13 +01:00
Marc Trunjer Kusk Nielsen
a55c3c04eb
Update computerome.config 
Adding genomes and modules back into schema_ingore_params to avoid warnings about unexpected parameters.
 2021-09-15 19:54:51 +02:00
Harshil Patel
09c63120a6
Merge pull request #277 from marcmtk/computerome 
Computerome
 2021-09-15 13:35:37 +01:00
Marc Trunjer Kusk Nielsen
8b29b5584e
Update computerome.config 2021-09-15 14:20:02 +02:00
Marc Trunjer Kusk Nielsen
ab8a9ad0b8
Update computerome.config 2021-09-15 13:27:23 +02:00
theoportlock
9c97220919 Merge branch 'master' of https://github.com/theoportlock/configs 2021-09-15 11:43:09 +02:00
theoportlock
3c86f8f47c Removes the broken clusterOptions 2021-09-15 11:42:43 +02:00
Marc Trunjer Kusk Nielsen
9a8644ef43
Update computerome.md 2021-09-15 11:10:02 +02:00
Marc Trunjer Kusk Nielsen
aad70fe86d
Merge branch 'nf-core:master' into computerome 2021-09-15 11:08:48 +02:00
Marc Trunjer Kusk Nielsen
29003e13f1
Update computerome.config 2021-09-15 10:22:57 +02:00
James A. Fellows Yates
f99a7fc525
Merge pull request #276 from jfy133/eva-eager-subprofiles 
Remove 1CPU for host removal fastq eager @EVA
 2021-09-14 13:07:50 +02:00
James A. Fellows Yates
a7b1183065
Remove 1CPU for host removal fastq 2021-09-14 11:52:21 +02:00
Marc Trunjer Kusk Nielsen
86e21b378a
Update computerome.config 2021-09-13 14:26:10 +02:00
Marc Trunjer Kusk Nielsen
275288632d
Update computerome.config 2021-09-13 14:22:22 +02:00
Marc Trunjer Kusk Nielsen
366f945a40
Update computerome.config 2021-09-13 14:20:55 +02:00
Marc Trunjer Kusk Nielsen
8ebdd43898
Update computerome.config 2021-09-13 14:01:35 +02:00
Marc Trunjer Kusk Nielsen
1071eb9d2e
Update computerome.config 2021-09-13 13:38:46 +02:00
Marc Trunjer Kusk Nielsen
2e515dc861
Update computerome.config 
Don't raise an error when --project is specified
 2021-09-13 13:38:25 +02:00
Marc Trunjer Kusk Nielsen
e5cba18c9b
Update computerome.config 2021-09-13 13:28:33 +02:00
Marc Trunjer Kusk Nielsen
0327ef40ea
Update computerome.config 2021-09-13 13:20:57 +02:00
Marc Trunjer Kusk Nielsen
cf899a2a4e
Update computerome.md 2021-09-13 08:48:27 +02:00
Marc Trunjer Kusk Nielsen
a0ba05fd99
Update computerome.config 2021-09-13 08:36:30 +02:00
Marc Trunjer Kusk Nielsen
f46172c25b
Update computerome.md 
Update with usage, heavily inspired by the UPPMAX docs
 2021-09-13 08:16:11 +02:00
Marc Trunjer Kusk Nielsen
84f94d92c4
Update computerome.config 
Added a way to use `--project` to provide project information to the scheduler. Inspired by the uppmax config
 2021-09-10 15:10:19 +02:00
Marc Trunjer Kusk Nielsen
463df26c72
Merge branch 'nf-core:master' into computerome 2021-09-10 14:47:05 +02:00