Matthieu Muffato
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1ee20f0bb0
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2 cores should be enough for the nextflow manager itself
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2022-07-20 14:35:22 +01:00 |
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Matthieu Muffato
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60dc451569
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The oversubscribed queue is recommended for workflow managers
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2022-07-20 14:34:59 +01:00 |
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Matthieu Muffato
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1f1a9ac5f0
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ISG provide the module, not the pathogen informatics team
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2022-07-20 14:34:25 +01:00 |
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Matthieu Muffato
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2aad355fbf
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The config doesn't mandate Singularity any more (Conda is fine too)
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2022-07-20 14:32:43 +01:00 |
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Priyanka Surana
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fd87fbcb9d
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Sanger profile update
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2022-07-20 13:22:51 +01:00 |
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Priyanka Surana
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58508c4fbc
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Sanger profile update
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2022-07-20 13:14:42 +01:00 |
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Maxime U. Garcia
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a02bd46617
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Merge pull request #398 from nvnieuwk/lower-submission-rate-for-vsc_ugent
lower submission rate for vsc_ugent
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2022-07-14 16:03:46 +02:00 |
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Nicolas Vannieuwkerke
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f40825ac14
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lower submission rate for vsc_ugent
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2022-07-14 15:50:50 +02:00 |
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Alexander Peltzer
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c6d59bf633
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Merge pull request #396 from drpatelh/nextclade
Update default Nextclade dataset to 2022-06-14T12:00:00Z
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2022-07-12 10:19:15 +02:00 |
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Harshil Patel
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2ab126fa4d
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Update default Nextclade dataset to 2022-06-14T12:00:00Z
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2022-07-11 18:28:41 +01:00 |
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James A. Fellows Yates
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08435ca300
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Merge pull request #382 from jfy133/eva-java-correction
EAGER @ EVA Further Java workarounds
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2022-07-04 13:42:13 +02:00 |
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James A. Fellows Yates
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a141ff626b
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Merge branch 'master' into eva-java-correction
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2022-07-04 13:35:50 +02:00 |
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Maxime U. Garcia
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49e779e337
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Merge pull request #394 from nvnieuwk/vsc-ugent-fix
Vsc ugent fix for job-intensive pipelines
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2022-07-01 16:26:41 +02:00 |
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Nicolas Vannieuwkerke
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8a74c517d4
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Merge branch 'vsc-ugent-fix' of github.com:nvnieuwk/configs into vsc-ugent-fix
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2022-07-01 16:16:22 +02:00 |
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Nicolas Vannieuwkerke
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1e34595280
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removed queue size limit
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2022-07-01 16:16:18 +02:00 |
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nvnieuwk
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5ff845cde7
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Merge branch 'master' into vsc-ugent-fix
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2022-07-01 16:10:45 +02:00 |
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Nicolas Vannieuwkerke
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fa949a069e
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added queuesize
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2022-07-01 16:01:19 +02:00 |
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Nicolas Vannieuwkerke
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abfa3f47f4
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lowered the job submit rate of vsc_ugent
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2022-07-01 15:55:44 +02:00 |
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Maxime U. Garcia
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23669d2df6
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Merge pull request #393 from Sage-Bionetworks-Workflows/bgrande/sage-sarek-config
Include `check_max()` definition for Sage configuration
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2022-06-23 21:47:17 +02:00 |
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Bruno Grande
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6f0d9e6c43
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Complete check_max() move to global config
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2022-06-23 10:10:28 -07:00 |
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Bruno Grande
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a19d79f6ff
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Move check_max() to global config
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2022-06-23 09:44:16 -07:00 |
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Bruno Grande
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1c7230cb08
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Add Sage-specific Sarek config
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2022-06-23 09:15:42 -07:00 |
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Phil Ewels
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1730751d97
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Merge pull request #389 from Sage-Bionetworks-Workflows/bgrande/sage-config
[WIP] Add custom configuration for Sage Bionetworks
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2022-06-23 11:34:40 +02:00 |
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Bruno Grande
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37121faf4a
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Fix typoe with label name
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2022-06-22 14:37:43 -07:00 |
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Bruno Grande
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ecd898584d
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Handle Sarek-specific max labels
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2022-06-22 13:54:13 -07:00 |
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Bruno Grande
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c7093dee13
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Reduce max_memory to fit on an instance
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2022-06-16 12:37:32 -07:00 |
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James Fellows Yates
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acabcbd9e8
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Use _JAVA_OPTIONS instead
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2022-06-15 15:27:40 +02:00 |
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James Fellows Yates
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76b0d1dd85
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Merge branch 'eva-java-correction' of github.com:jfy133/nf-core-configs into eva-java-correction
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2022-06-15 15:22:25 +02:00 |
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James Fellows Yates
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58dd9d49c7
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Move beforeScript exports to env scope
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2022-06-15 15:21:20 +02:00 |
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Bruno Grande
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2898736cbe
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Add Sage Bionetworks nf-core configuration
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2022-06-08 14:16:52 -07:00 |
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Maxime U. Garcia
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b50af6bf7e
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Merge pull request #388 from nvnieuwk/singularity-fix-for-vsc_ugent
Singularity fix for vsc ugent
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2022-06-08 16:34:38 +02:00 |
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Nicolas Vannieuwkerke
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b6d38859f0
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fix for singularity cache for vsc_ugent profile
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2022-06-08 16:28:28 +02:00 |
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Nicolas Vannieuwkerke
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98eacf030d
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fix for singularity cache for vsc_ugent profile
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2022-06-08 16:27:48 +02:00 |
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Maxime U. Garcia
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844d250011
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Merge branch 'master' into eva-java-correction
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2022-06-07 11:57:05 +02:00 |
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Maxime U. Garcia
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5fdc8b7b1b
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Merge pull request #381 from maxulysse/master
add fix linting from comment
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2022-06-07 11:54:19 +02:00 |
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Maxime U. Garcia
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b0f1746abf
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Merge branch 'master' into master
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2022-06-07 11:42:50 +02:00 |
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James A. Fellows Yates
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515cbf0a77
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Merge pull request #385 from nvnieuwk/fix-for-failing-tests-vsc-ugent-profile
Fix for failing tests for vsc_ugent
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2022-06-07 11:41:00 +02:00 |
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Nicolas Vannieuwkerke
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44e25830e4
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update for vsc_ugent
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2022-06-07 11:33:22 +02:00 |
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James A. Fellows Yates
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46fba9c597
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Update eva.config
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2022-06-03 21:10:48 +02:00 |
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James A. Fellows Yates
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05cc8a08f1
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Update eva.config
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2022-06-03 21:08:19 +02:00 |
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Maxime U. Garcia
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4587fc4215
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Merge pull request #379 from nf-core/config_ucph-mjolnir_ash
custom config mjolnir_globe
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2022-06-03 17:28:57 +02:00 |
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Åshild J. Vågene
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ed526530d2
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Rename mjolnir_globe to mjolnir_globe.config
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2022-06-03 17:15:12 +02:00 |
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Åshild J. Vågene
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34feaa8b6b
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prettier output
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2022-06-03 17:08:15 +02:00 |
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Åshild J. Vågene
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2d82218318
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typo
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2022-06-03 16:42:08 +02:00 |
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MaxUlysse
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5a04f62681
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add fix linting from comment
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2022-06-03 15:57:24 +02:00 |
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Åshild J. Vågene
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144ca851c1
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Update mjolnir_globe.md
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2022-06-03 15:36:19 +02:00 |
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Åshild J. Vågene
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22ed36a73d
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cacheDir update
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2022-06-03 15:33:58 +02:00 |
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James Fellows Yates
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9ef52af084
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Increase overhead
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2022-06-03 14:24:27 +02:00 |
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James Fellows Yates
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c40ebb9acf
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Add overhead for get_software_versions
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2022-06-03 14:21:41 +02:00 |
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James Fellows Yates
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df0429ce9d
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Replace oracle specific _JAVA_OPTIONS to portable JAVA_TOOLS_OPTIONS
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2022-06-03 14:20:39 +02:00 |
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