lquayle88
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32403b6222
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Updated pipeline config docs for atacseq, chipseq and rnaseq
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2022-09-14 08:46:11 +01:00 |
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lquayle88
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91bfa7341f
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Made changes requested for PR
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2022-09-14 08:42:40 +01:00 |
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Lewis Quayle
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61ae463606
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Updated sbc_sharc.md
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2022-09-13 17:13:57 +01:00 |
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lquayle88
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a9b62c53e0
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Added global institutional and pipeline configs for sbc_sharc
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2022-09-13 17:02:44 +01:00 |
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Bruno Grande
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80831358f9
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Merge branch 'master' into bgrande/sage-aws
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2022-09-01 13:21:36 -07:00 |
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SPearce
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a142ad7eae
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Added link to Sarek specific documentation
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2022-09-01 13:55:08 +01:00 |
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Simon Pearce
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14a97ad0e8
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Merge branch 'master' into crukmi
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2022-09-01 10:07:24 +01:00 |
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ameynert
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28e59e38b4
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Run prettier
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2022-09-01 09:28:05 +01:00 |
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Kalayanee Chairat
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700f14d828
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Merge pull request #1 from nf-core/master
Merging from master
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2022-09-01 15:07:43 +07:00 |
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Simon Pearce
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864da0b5be
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Merge branch 'master' into crukmi
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2022-08-31 18:19:47 +01:00 |
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Bruno Grande
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9a37404a04
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Merge branch 'master' into bgrande/sage-aws
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2022-08-31 09:22:07 -07:00 |
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Bruno Grande
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c883723559
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Simplify resource adjustments
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2022-08-31 09:10:30 -07:00 |
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Annick Renevey
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0851903f66
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include new config in pipeline configs file
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2022-08-31 14:19:07 +02:00 |
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Austyn Trull
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90f638d376
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Updating the cheaha documentation to clarify that /data/temporary-scratch/atrull will be used as storage for files that would normally go into one of the temporary locations when using Singularity
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2022-08-29 10:47:46 -05:00 |
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Bruno Grande
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9c8cb71bc7
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Merge branch 'master' into bgrande/sage-aws
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2022-08-25 16:29:20 -07:00 |
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Bruno Grande
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317e5a16cb
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Improve AWS-related config for Sage profile
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2022-08-25 16:24:52 -07:00 |
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kalayaneech
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93c4ba67a0
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adding adcra configuration
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2022-08-25 16:17:09 +07:00 |
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SPearce
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d0662a3acb
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Ran prettier
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2022-08-15 09:33:30 +01:00 |
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SPearce
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a97b887d93
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Written a help file
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2022-08-12 16:57:04 +01:00 |
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SPearce
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0bfedde296
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Initial attempt at a CRUKMI config file
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2022-08-12 15:43:22 +01:00 |
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Gwenna Breton
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0e4f2b40d3
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Added email of IT group
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2022-08-08 16:14:17 +02:00 |
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Gwenna Breton
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2740b5efbf
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Update docs/medair.md
Fixed typo
Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
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2022-08-08 16:08:05 +02:00 |
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Gwenna Breton
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648025c1ce
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Clarified where to store singularity images
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2022-08-08 16:04:21 +02:00 |
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Gwenna Breton
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6aa78833c3
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Merge branch 'master' into medair
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2022-08-01 16:46:55 +02:00 |
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Matthieu Muffato
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dda1d810b1
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Latest stable version (rather than an edge one)
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2022-07-20 14:35:39 +01:00 |
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Matthieu Muffato
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1ee20f0bb0
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2 cores should be enough for the nextflow manager itself
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2022-07-20 14:35:22 +01:00 |
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Matthieu Muffato
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60dc451569
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The oversubscribed queue is recommended for workflow managers
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2022-07-20 14:34:59 +01:00 |
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Matthieu Muffato
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1f1a9ac5f0
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ISG provide the module, not the pathogen informatics team
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2022-07-20 14:34:25 +01:00 |
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Matthieu Muffato
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2aad355fbf
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The config doesn't mandate Singularity any more (Conda is fine too)
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2022-07-20 14:32:43 +01:00 |
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Priyanka Surana
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fd87fbcb9d
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Sanger profile update
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2022-07-20 13:22:51 +01:00 |
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Gwenna Breton
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6b9cdc8ef3
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Added info about Sentieon singularities
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2022-07-07 14:24:15 +02:00 |
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Gwenna Breton
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746db14d47
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Update medair.md
- updated text about storing singularity images
- updated text about using profiles
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2022-07-07 11:42:46 +02:00 |
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Gwennid
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96fd2bf217
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Fixed formatting
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2022-07-06 11:42:05 +02:00 |
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Gwenna Breton
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1d13dd9fbc
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Changed where cgg-it is mentioned
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2022-07-06 11:24:03 +02:00 |
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Gwenna Breton
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235097e58e
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Addressed review comments
- removed mention of iGenomes
- clarified whom to contact for support
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2022-07-06 11:20:59 +02:00 |
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Gwenna Breton
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1d7a34b11f
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Removed comment about internal doc
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2022-07-06 11:17:58 +02:00 |
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Gwenna Breton
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b202ad70ac
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Removed mention of specific module versions
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2022-07-06 11:16:38 +02:00 |
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Gwenna Breton
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84174043e4
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Added details for nf-core pipelines download
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2022-06-30 16:41:50 +02:00 |
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Gwenna Breton
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2398110ea5
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Added info on dowloading pipelines
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2022-06-30 14:24:17 +02:00 |
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Gwenna Breton
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22f73b06f9
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Updated info about the different profiles
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2022-06-30 12:00:05 +02:00 |
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Gwenna Breton
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f718025e79
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Added doc file for medair
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2022-06-30 11:43:04 +02:00 |
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Bruno Grande
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6f0d9e6c43
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Complete check_max() move to global config
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2022-06-23 10:10:28 -07:00 |
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Bruno Grande
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1c7230cb08
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Add Sage-specific Sarek config
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2022-06-23 09:15:42 -07:00 |
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Bruno Grande
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2898736cbe
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Add Sage Bionetworks nf-core configuration
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2022-06-08 14:16:52 -07:00 |
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Åshild J. Vågene
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34feaa8b6b
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prettier output
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2022-06-03 17:08:15 +02:00 |
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Åshild J. Vågene
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2d82218318
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typo
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2022-06-03 16:42:08 +02:00 |
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Åshild J. Vågene
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144ca851c1
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Update mjolnir_globe.md
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2022-06-03 15:36:19 +02:00 |
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Phil Ewels
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b51059a3ae
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Merge branch 'master' into config_ucph-mjolnir_ash
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2022-06-03 13:21:36 +02:00 |
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James A. Fellows Yates
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7353fb257d
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Merge pull request #380 from jfy133/taxprofiler
Add MAG @ EVA profile
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2022-06-03 12:54:47 +02:00 |
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James A. Fellows Yates
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97d57539e3
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Apply suggestions from code review
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
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2022-06-03 12:51:20 +02:00 |
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