1832 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
James A. Fellows Yates	c70a95f9c9	Merge branch 'master' into patch-2	2022-08-29 08:23:31 +02:00
Bruno Grande	9c8cb71bc7	Merge branch 'master' into bgrande/sage-aws	2022-08-25 16:29:20 -07:00
Bruno Grande	317e5a16cb	Improve AWS-related config for Sage profile	2022-08-25 16:24:52 -07:00
Harshil Patel	84b0b705a2	Merge pull request #405 from drpatelh/monkeypox ... Replace NC_063383.1 fasta and gff and add Nextclade config	2022-08-25 12:57:43 +01:00
kalayaneech	93c4ba67a0	adding adcra configuration	2022-08-25 16:17:09 +07:00
Harshil Patel	8b9661825b	Replace NC_063383.1 fasta and gff and add Nextclade config	2022-08-24 15:21:44 +01:00
Harshil Patel	d71e31c378	Merge pull request #403 from drpatelh/monkeypox ... Add monkeypox genome files to viralrecon genome config file	2022-08-24 12:16:21 +01:00
Harshil Patel	8dcfcfd856	Add monkeypox genome files to viralrecon genome config file	2022-08-24 12:13:17 +01:00
Austyn Trull	8d5ae4c3ab	Committing changes made by Brandon Wilk so that singularity containers will use scratch space	2022-08-23 15:30:13 -05:00
Ramprasad Neethiraj	49c71e0c28	Merge pull request #363 from ramprasadn/feat/hasta_update ... Add a profile for stubruns in hasta	2022-08-23 22:14:18 +02:00
Ramprasad Neethiraj	9182b55acc	Merge branch 'master' into feat/hasta_update	2022-08-23 11:21:58 +02:00
Anders Jemt	9c26cfddaa	Merge pull request #390 from raysloks/feat/hasta_java_memory_fix ... Feat/hasta java memory fix	2022-08-22 15:46:39 +02:00
Ramprasad Neethiraj	7ff2977a29	Merge branch 'master' of github.com:nf-core/configs into feat/hasta_update	2022-08-18 15:58:56 +02:00
Ramprasad Neethiraj	dd63dee7aa	update conf	2022-08-18 15:56:41 +02:00
Ramprasad Neethiraj	1c942759ea	update sentieon	2022-08-18 15:52:31 +02:00
Ramprasad Neethiraj	a6cce4ab6a	Merge branch 'master' into feat/hasta_java_memory_fix	2022-08-18 13:36:08 +02:00
Phil Ewels	ea89504bc7	Merge pull request #397 from ErikDanielsson/add-citation-cff ... Add `CITATION.cff` for the nf-core publication	2022-08-18 09:27:08 +02:00
SPearce	8ae3cba5e3	Reduce MPILEUP to 5GB	2022-08-15 11:35:59 +01:00
SPearce	d0662a3acb	Ran prettier	2022-08-15 09:33:30 +01:00
SPearce	a97b887d93	Written a help file	2022-08-12 16:57:04 +01:00
SPearce	0bfedde296	Initial attempt at a CRUKMI config file	2022-08-12 15:43:22 +01:00
Gwenna Breton	99df08f409	Merge pull request #395 from ClinicalGenomicsGBG/medair ... New config: Add config for Medair	2022-08-09 11:03:56 +02:00
Gwenna Breton	0e4f2b40d3	Added email of IT group	2022-08-08 16:14:17 +02:00
Gwenna Breton	ffefefe0ab	Added contact emails	2022-08-08 16:11:55 +02:00
Gwenna Breton	2740b5efbf	Update docs/medair.md ... Fixed typo Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>	2022-08-08 16:08:05 +02:00
Gwenna Breton	648025c1ce	Clarified where to store singularity images	2022-08-08 16:04:21 +02:00
Gwenna Breton	6aa78833c3	Merge branch 'master' into medair	2022-08-01 16:46:55 +02:00
James A. Fellows Yates	0b47849532	Update mpcdf.config	2022-07-27 14:23:29 +02:00
Alexander Peltzer	36487c8c25	Merge pull request #399 from nf-core/sanger ... Sanger	2022-07-20 16:51:46 +02:00
Matthieu Muffato	dda1d810b1	Latest stable version (rather than an edge one)	2022-07-20 14:35:39 +01:00
Matthieu Muffato	1ee20f0bb0	2 cores should be enough for the nextflow manager itself	2022-07-20 14:35:22 +01:00
Matthieu Muffato	60dc451569	The oversubscribed queue is recommended for workflow managers	2022-07-20 14:34:59 +01:00
Matthieu Muffato	1f1a9ac5f0	ISG provide the module, not the pathogen informatics team	2022-07-20 14:34:25 +01:00
Matthieu Muffato	2aad355fbf	The config doesn't mandate Singularity any more (Conda is fine too)	2022-07-20 14:32:43 +01:00
Priyanka Surana	fd87fbcb9d	Sanger profile update	2022-07-20 13:22:51 +01:00
Priyanka Surana	58508c4fbc	Sanger profile update	2022-07-20 13:14:42 +01:00
Maxime U. Garcia	a02bd46617	Merge pull request #398 from nvnieuwk/lower-submission-rate-for-vsc_ugent ... lower submission rate for vsc_ugent	2022-07-14 16:03:46 +02:00
Nicolas Vannieuwkerke	f40825ac14	lower submission rate for vsc_ugent	2022-07-14 15:50:50 +02:00
Alexander Peltzer	c6d59bf633	Merge pull request #396 from drpatelh/nextclade ... Update default Nextclade dataset to 2022-06-14T12:00:00Z	2022-07-12 10:19:15 +02:00
Erik Danielsson	5d7789792f	Add CITATION.cff and update .editorconfig	2022-07-12 09:57:20 +02:00
Harshil Patel	2ab126fa4d	Update default Nextclade dataset to 2022-06-14T12:00:00Z	2022-07-11 18:28:41 +01:00
qlr900	ff55ec67b4	update to current java+nextflow module combination	2022-07-07 14:30:48 +02:00
Gwenna Breton	6b9cdc8ef3	Added info about Sentieon singularities	2022-07-07 14:24:15 +02:00
Gwenna Breton	4538e8aa36	Update medair.config ... - added path to singularity image for Sentieon - harmonized alignment	2022-07-07 13:41:42 +02:00
Gwenna Breton	746db14d47	Update medair.md ... - updated text about storing singularity images - updated text about using profiles	2022-07-07 11:42:46 +02:00
qlr900	d19d6c0ae0	update wording	2022-07-06 16:19:16 +02:00
qlr900	d2b6b07de8	remove comments for mnaseseq	2022-07-06 14:18:31 +02:00
Gwennid	b6e2d03a02	Added Singularity cache dir	2022-07-06 13:59:35 +02:00
qlr900	4f98876429	add export to NXF_SINGULARITY_CACHEDIR	2022-07-06 13:35:10 +02:00
qlr900	6939c6f003	lower queueSize to 5	2022-07-06 13:34:18 +02:00