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Author	SHA1	Message	Date
James A. Fellows Yates	4286a3a342	Bump additional library merge memor	2021-09-08 15:16:40 +02:00
James A. Fellows Yates	39f54db097	Update container cache	2021-09-05 12:09:02 +02:00
James A. Fellows Yates	59a0901b68	Add library merge steps to have overhead	2021-09-05 12:07:53 +02:00
James A. Fellows Yates	94cbb031c6	Update eva.config	2021-08-30 13:29:44 +02:00
James A. Fellows Yates	5fbd938bc1	Export user env too	2021-08-27 10:08:20 +02:00
Phil Ewels	3d77ffdf55	Merge pull request #230 from nf-core/docs-custom_config_base	2021-08-23 19:34:30 +02:00
James A. Fellows Yates	bcb844f896	Merge pull request #268 from jfy133/master ... Delete SHH profiles due to decommissioning	2021-08-23 14:08:13 +02:00
James A. Fellows Yates	e8bb6d0dab	Merge pull request #267 from jfy133/eva-eager-subprofiles ... Add genotyping_ug to SGE fixes for EAGER @ EVA	2021-08-20 10:22:16 +02:00
James Fellows Yates	f41cb5986f	remove from testing	2021-08-20 10:18:04 +02:00
James Fellows Yates	59af7f0eee	Delete SHH profiles due to decommissioning	2021-08-20 10:15:39 +02:00
James A. Fellows Yates	6701354060	Add genotyping_ug to SGE fixes	2021-08-20 10:11:11 +02:00
James A. Fellows Yates	5c9896b687	Merge pull request #265 from jfy133/eva-eager-subprofiles ... eva/eager: Try new strategy for SGE and Java incompatibility	2021-08-04 10:43:14 +02:00
James Fellows Yates	b0e344846d	Changes after code review from @aidaanva	2021-08-04 10:37:49 +02:00
James Fellows Yates	76fc461670	Try new strategy for SGE/JAVA bs	2021-08-04 10:14:56 +02:00
James A. Fellows Yates	0c3428f5d1	Merge pull request #263 from jfy133/master ... eager @ eva	2021-08-03 14:20:50 +02:00
James A. Fellows Yates	00491de038	Update eva.config	2021-08-03 13:54:14 +02:00
BarryDigby	732c3cfe7d	Merge pull request #262 from BarryDigby/master ... NUIG config	2021-07-28 13:00:50 +01:00
Barry digby	2c6b9176e2	Merge branch 'master' of github.com:BarryDigby/configs	2021-07-28 12:19:45 +01:00
Barry digby	ef6b13e377	tabs rm	2021-07-28 12:19:11 +01:00
BarryDigby	871b82f6f4	Merge branch 'master' into master	2021-07-28 12:16:16 +01:00
Barry digby	f62298d211	w	2021-07-28 11:44:06 +01:00
Barry digby	2fc8082aad	w	2021-07-28 11:43:39 +01:00
Barry digby	11cb6cc70d	w	2021-07-28 11:41:42 +01:00
Barry digby	380adf083a	markdowwwwn	2021-07-28 11:41:16 +01:00
Maxime U. Garcia	f82da1de71	Merge pull request #261 from maxulysse/master_cambridge ... fix: closes #260 + sort some lines	2021-07-28 10:10:39 +02:00
Barry digby	70b2644c9a	.	2021-07-27 17:39:37 +01:00
Barry digby	2a06d956b3	mdlint so picky : (	2021-07-27 17:18:42 +01:00
Barry digby	b7c7115f1e	lll ... Merge branch 'nf-core-master'	2021-07-27 17:13:58 +01:00
Barry digby	2b6e80561a	Merge branch 'master' of https://github.com/nf-core/configs into	2021-07-27 17:13:17 +01:00
Barry digby	4f962260d0	s	2021-07-27 17:08:53 +01:00
Barry digby	04c0da5a2f	nuig confg (lugh)	2021-07-27 17:05:27 +01:00
MaxUlysse	895c4eb610	fix: closes #260 + sort some lines	2021-07-27 16:35:19 +02:00
Harshil Patel	6ede44b221	Merge pull request #258 from ameynert/master ... Update eddie config docs & added viralrecon config	2021-07-22 15:14:54 +01:00
ameynert	2112168420	Set BLASTDB_LMDB_MAP_SIZE ... This environment variable needs to be set in order to prevent memory allocation errors in the MAKEBLASTDB process.	2021-07-22 15:07:19 +01:00
ameynert	17fad9dd15	Update pipeline/viralrecon.config ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-07-21 12:27:09 +01:00
ameynert	d9abb7d59f	Added eddie config to viralrecon	2021-07-21 12:23:47 +01:00
ameynert	5224eb5574	Updated resources folder & institute name ... Local resources folder was re-organized & re-named BioinformaticsResources. Added note about viralrecon & atacseq pipeline-specific config. IGMM name-changed recently; updated to IGC.	2021-07-21 12:15:17 +01:00
ameynert	4ceb369af5	eddie.config for viralrecon pipeline	2021-07-21 12:10:43 +01:00
ameynert	0da2c57784	Merge pull request #4 from nf-core/master ... Merge from nf-core/configs	2021-07-21 12:09:32 +01:00
Maxime U. Garcia	47217cae5b	Merge pull request #231 from maxulysse/master_kraken ... Remove kraken profile	2021-07-20 09:29:47 +02:00
Maxime U. Garcia	30e058abf0	Merge branch 'master' into master_kraken	2021-07-20 09:26:56 +02:00
Harshil Patel	836d3c4015	Merge pull request #257 from drpatelh/V1200 ... Add ARTIC v1200 primers to genomes config for viralrecon	2021-07-12 14:03:29 +01:00
Harshil Patel	962dca7a46	Add ARTIC v1200 primers to genomes config for viralrecon	2021-07-12 12:24:49 +01:00
Gisela Gabernet	435955ab20	Merge pull request #256 from ggabernet/master ... Add AWS tower config	2021-07-03 16:54:59 +02:00
ggabernet	e6f1bfaa1a	finally add profile	2021-07-03 15:13:10 +02:00
ggabernet	68e12f85ec	fix cchecker	2021-07-03 15:11:51 +02:00
ggabernet	2a69b90be6	fix cchecker	2021-07-03 15:09:43 +02:00
ggabernet	6475671c38	test that it fails	2021-07-03 14:57:58 +02:00
ggabernet	926f3ba24f	update checker script	2021-07-03 14:52:44 +02:00
ggabernet	79fffbd77f	update changes	2021-07-03 14:39:17 +02:00