815 commits

Author	SHA1	Message	Date
James A. Fellows Yates	a141ff626b	Merge branch 'master' into eva-java-correction	2022-07-04 13:35:50 +02:00
Nicolas Vannieuwkerke	8a74c517d4	Merge branch 'vsc-ugent-fix' of github.com:nvnieuwk/configs into vsc-ugent-fix	2022-07-01 16:16:22 +02:00
Nicolas Vannieuwkerke	1e34595280	removed queue size limit	2022-07-01 16:16:18 +02:00
nvnieuwk	5ff845cde7	Merge branch 'master' into vsc-ugent-fix	2022-07-01 16:10:45 +02:00
Nicolas Vannieuwkerke	fa949a069e	added queuesize	2022-07-01 16:01:19 +02:00
Nicolas Vannieuwkerke	abfa3f47f4	lowered the job submit rate of vsc_ugent	2022-07-01 15:55:44 +02:00
Bruno Grande	6f0d9e6c43	Complete check_max() move to global config	2022-06-23 10:10:28 -07:00
Bruno Grande	a19d79f6ff	Move check_max() to global config	2022-06-23 09:44:16 -07:00
Bruno Grande	1c7230cb08	Add Sage-specific Sarek config	2022-06-23 09:15:42 -07:00
Bruno Grande	37121faf4a	Fix typoe with label name	2022-06-22 14:37:43 -07:00
Bruno Grande	ecd898584d	Handle Sarek-specific max labels	2022-06-22 13:54:13 -07:00
Bruno Grande	c7093dee13	Reduce max_memory to fit on an instance	2022-06-16 12:37:32 -07:00
James Fellows Yates	acabcbd9e8	Use _JAVA_OPTIONS instead	2022-06-15 15:27:40 +02:00
James Fellows Yates	76b0d1dd85	Merge branch 'eva-java-correction' of github.com:jfy133/nf-core-configs into eva-java-correction	2022-06-15 15:22:25 +02:00
James Fellows Yates	58dd9d49c7	Move beforeScript exports to env scope	2022-06-15 15:21:20 +02:00
Bruno Grande	2898736cbe	Add Sage Bionetworks nf-core configuration	2022-06-08 14:16:52 -07:00
Nicolas Vannieuwkerke	b6d38859f0	fix for singularity cache for vsc_ugent profile	2022-06-08 16:28:28 +02:00
Nicolas Vannieuwkerke	98eacf030d	fix for singularity cache for vsc_ugent profile	2022-06-08 16:27:48 +02:00
Maxime U. Garcia	844d250011	Merge branch 'master' into eva-java-correction	2022-06-07 11:57:05 +02:00
Nicolas Vannieuwkerke	44e25830e4	update for vsc_ugent	2022-06-07 11:33:22 +02:00
James A. Fellows Yates	46fba9c597	Update eva.config	2022-06-03 21:10:48 +02:00
James A. Fellows Yates	05cc8a08f1	Update eva.config	2022-06-03 21:08:19 +02:00
Åshild J. Vågene	ed526530d2	Rename mjolnir_globe to mjolnir_globe.config	2022-06-03 17:15:12 +02:00
Åshild J. Vågene	22ed36a73d	cacheDir update	2022-06-03 15:33:58 +02:00
James Fellows Yates	9ef52af084	Increase overhead	2022-06-03 14:24:27 +02:00
James Fellows Yates	c40ebb9acf	Add overhead for get_software_versions	2022-06-03 14:21:41 +02:00
James Fellows Yates	df0429ce9d	Replace oracle specific _JAVA_OPTIONS to portable JAVA_TOOLS_OPTIONS	2022-06-03 14:20:39 +02:00
Phil Ewels	b51059a3ae	Merge branch 'master' into config_ucph-mjolnir_ash	2022-06-03 13:21:36 +02:00
James A. Fellows Yates	7353fb257d	Merge pull request #380 from jfy133/taxprofiler ... Add MAG @ EVA profile	2022-06-03 12:54:47 +02:00
James Fellows Yates	5a67eba04c	Add MAG @ EVA profile	2022-06-03 12:41:08 +02:00
Åshild J. Vågene	9b9a6f0188	Update and rename holo_globe to mjolnir_globe	2022-06-02 15:09:52 +02:00
Åshild J. Vågene	6d9cc91c5f	Update holo_globe	2022-06-02 15:03:47 +02:00
Åshild J. Vågene	64fe4677b1	Update holo_globe	2022-05-31 15:26:23 +02:00
Åshild J. Vågene	0b51552e88	Update holo_globe	2022-05-31 15:23:43 +02:00
Emil Bertilsson	80e2a50a2f	Merge pull request #378 from raysloks/feat/hasta_java_memory_fix ... Feat/hasta java memory fix	2022-05-30 14:40:52 +02:00
Emil	8453f6b41a	Moves qualimap arg to pipeline-specific config	2022-05-30 12:58:12 +02:00
Emil	29fa08c434	Adds _JAVA_OPTIONS to singularity whitelist	2022-05-30 11:07:24 +02:00
Emil	19497a4183	Makes qualimap fix work for most memory amounts	2022-05-30 11:06:48 +02:00
Åshild J. Vågene	bb25c77e7c	Update holo_globe	2022-05-20 17:01:30 +02:00
Åshild J. Vågene	d3e5c79fb4	Create holo_globe	2022-05-20 15:44:20 +02:00
Nicolas Vannieuwkerke	c2b26a734d	automated the internal cache dir location for singularity	2022-05-20 09:48:19 +02:00
Nicolas Vannieuwkerke	cc86e6b270	Added the VSC UGent profile	2022-05-20 09:12:18 +02:00
Sarah Guinchard	be9711731a	Merge pull request #375 from nf-core/ifb_core-config-update ... Ifb core config update	2022-05-13 14:45:44 +02:00
Sarah Guinchard	3538f8511a	removed comment	2022-05-12 11:02:42 +02:00
sofstam	54b3cda34d	Add review suggestion	2022-05-12 11:00:26 +02:00
Sarah Guinchard	6bb7c1a422	Update config file with queue & correct ressources	2022-05-12 10:55:00 +02:00
sofstam	c59149d64c	Update docs for hasta config	2022-05-12 10:47:03 +02:00
James Fellows Yates	e1f780d976	Add taxprofiler for eVA	2022-05-12 07:54:17 +01:00
sofstam	5bc6ed90bd	Add hasta config for taxprofiler	2022-05-11 11:13:31 +02:00
Thiseas C. Lamnidis	d09f5fc116	Update eva.config ... eigenstrat_snp_coverage also loads pandas	2022-05-06 15:12:04 +02:00