Alexander Peltzer
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7774a6a8f3
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Merge pull request #163 from piotr-faba-ardigen/add_bi_config
resolve #162 bug
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2020-06-19 08:57:44 +02:00 |
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Piotr Faba
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cb26bef3f3
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resolve #162 bug
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2020-06-18 20:30:05 +02:00 |
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Alexander Peltzer
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bb7f67e2b5
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Merge pull request #160 from ewels/master
Merge czbiohub_aws_highpriority profile into czbiohub_aws
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2020-06-17 19:20:07 +02:00 |
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Phil Ewels
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17824d2d62
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Merge czbiohub_aws_highpriority profile into czbiohub_aws
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2020-06-16 15:20:39 +02:00 |
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Phil Ewels
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e091ec259e
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Merge pull request #158 from phue/singularity_global
CBE: don't load singularity module
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2020-06-05 12:20:39 +02:00 |
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phue
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6d356cc918
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CBE: don't load singularity module
singularity is now installed from CentOS repos, the environment module will be removed
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2020-06-05 12:07:26 +02:00 |
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Alexander Peltzer
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adf90f3994
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Merge pull request #146 from adrlar/master
Adding config for ICR davros cluster
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2020-06-03 20:09:49 +02:00 |
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Adrian
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3e4db8c845
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adding icr_davros to test
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2020-06-03 14:55:58 +01:00 |
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Alexander Peltzer
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f877644059
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Merge branch 'master' into master
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2020-05-29 11:43:47 +02:00 |
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Alexander Peltzer
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0d5899eb26
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Merge pull request #157 from nf-core/bi-docs
Add BI to main readme.md
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2020-05-28 10:25:19 +02:00 |
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Alexander Peltzer
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dd56355c7c
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Update bi.md
No trailing spaces it said.
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2020-05-28 10:18:16 +02:00 |
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Alexander Peltzer
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f4df5b5a75
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Add BI Docs
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2020-05-28 10:16:22 +02:00 |
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Alexander Peltzer
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0efa9f248e
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Add BI to main readme.md
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2020-05-28 10:12:50 +02:00 |
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Alexander Peltzer
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32ec230098
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Merge pull request #156 from piotr-faba-ardigen/add_bi_config
Add bi config
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2020-05-27 21:03:15 +02:00 |
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Piotr Faba
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f139750bf4
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print the error message before throwing Exception
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2020-05-27 19:14:43 +02:00 |
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Piotr Faba
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3c695ba71c
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test error display
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2020-05-27 18:00:47 +02:00 |
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Alexander Peltzer
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6011419454
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Merge pull request #154 from jfy133/master
Update SHH nf-core/eager group-specific profiles
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2020-05-27 17:52:09 +02:00 |
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Alexander Peltzer
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27f3207cb9
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Merge pull request #155 from piotr-faba-ardigen/add_bi_config
Add BI internal config
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2020-05-27 17:49:41 +02:00 |
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Piotr Faba
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18d8edb046
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add description and profile
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2020-05-27 17:41:19 +02:00 |
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Piotr Faba
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f5e2a9f9f3
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try without dummy.config: use relative path
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2020-05-27 16:55:37 +02:00 |
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Piotr Faba
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3ad0003979
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test without dummy config
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2020-05-27 16:46:08 +02:00 |
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Piotr Faba
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1a9db371c3
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remove echos
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2020-05-27 16:43:32 +02:00 |
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Piotr Faba
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ac47d020cb
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debug: continue
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2020-05-27 16:38:11 +02:00 |
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Piotr Faba
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ff5fdd097b
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debug
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2020-05-27 16:35:55 +02:00 |
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Piotr Faba
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ab3070582e
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Fix paths to dummy.config
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2020-05-27 16:32:19 +02:00 |
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Piotr Faba
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66f191a1cf
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declate NXF_GLOBAL_CONFIG in ci
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2020-05-27 16:30:00 +02:00 |
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Piotr Faba
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2685275952
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switch include off
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2020-05-27 16:24:47 +02:00 |
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Piotr Faba
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c31b03108c
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retry without Exception
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2020-05-27 16:22:56 +02:00 |
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Piotr Faba
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1354ae4063
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add bi config
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2020-05-27 16:19:15 +02:00 |
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James A. Fellows Yates
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0943ba088a
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Mention SHH EAGER group-specific profiles
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2020-05-26 11:14:42 +02:00 |
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James A. Fellows Yates
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d070ed70d1
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Update BWA settings based on feedback
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2020-05-26 11:11:42 +02:00 |
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James A. Fellows Yates
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e31e781f29
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Remove debugging
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2020-05-26 11:07:06 +02:00 |
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Harshil Patel
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5981e5ec27
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Merge pull request #153 from FriederikeHanssen/cfc_scratch
Add scratch = true to avoid writing of intermediate file to /tmp
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2020-05-22 15:48:00 +01:00 |
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James A. Fellows Yates
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ff915ee504
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Update shh.config
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2020-05-12 12:47:59 +02:00 |
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James A. Fellows Yates
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8225e07819
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Condensed base params and added names for debugging
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2020-05-12 12:47:25 +02:00 |
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James A. Fellows Yates
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4814bac1c3
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Fix sub-profiles
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2020-05-12 12:42:42 +02:00 |
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Phil Ewels
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a7afd6a4e5
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Merge pull request #152 from nf-core/jfy133-patch-1
SHH doc typo fixes
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2020-05-07 12:03:45 +02:00 |
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James A. Fellows Yates
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2e3b577fb3
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Typo fixes
I'll never forgive our directory for that name...
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2020-05-07 11:50:11 +02:00 |
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James A. Fellows Yates
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38e9e54932
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Merge pull request #151 from jfy133/master
Add additional custom nf-core/eager params for SHH profile
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2020-05-07 09:25:02 +02:00 |
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James A. Fellows Yates
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0a312cd2c9
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Update shh.md
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2020-05-07 09:17:56 +02:00 |
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James A. Fellows Yates
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cf6e697f0b
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Further update aln based on modifications of EAGER defaults
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2020-05-07 09:16:08 +02:00 |
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James A. Fellows Yates
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4d7e9ccf2f
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Apply suggestions from review
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2020-05-06 08:35:23 +02:00 |
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James A. Fellows Yates
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4804052b23
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Update SHH nf-core/eager pipeline docs
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2020-05-04 21:04:17 +02:00 |
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James A. Fellows Yates
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d42d7f4146
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Sets the bwa aln parameter to 0.01 which is more commonly used at SHH
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2020-05-04 21:02:16 +02:00 |
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FriederikeHanssen
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d6813d9c39
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Add scratch = true to avoid writing of intermediate file to /tmp
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2020-05-04 17:09:43 +02:00 |
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Maxime Garcia
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fe77f02551
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Merge pull request #150 from MaxUlysse/Munin
update rnafusion munin specific config
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2020-04-28 17:46:17 +02:00 |
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MaxUlysse
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e6f4d58fa6
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update rnafusion munin specific config
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2020-04-28 17:06:04 +02:00 |
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Adrian
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ad12bd4ad1
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testing automounts
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2020-04-28 16:03:06 +01:00 |
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Adrian
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1e68a10ef0
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adding documentation for icr_davros
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2020-04-28 16:02:26 +01:00 |
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Harshil Patel
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2300d5a962
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Update genomes.config
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2020-04-09 18:22:41 +01:00 |
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