James A. Fellows Yates
|
7ec12b6736
|
Update eva.config
|
2021-09-09 13:10:05 +02:00 |
|
James A. Fellows Yates
|
96e26a5411
|
Merge pull request #272 from jfy133/eva-eager-subprofiles
Bump additional library merge memory for eager @ EVA
|
2021-09-08 15:25:07 +02:00 |
|
James A. Fellows Yates
|
4286a3a342
|
Bump additional library merge memor
|
2021-09-08 15:16:40 +02:00 |
|
Rogan Grant
|
a7aca37bc8
|
Set autoMounts to true
|
2021-09-06 15:15:46 -05:00 |
|
Rogan Grant
|
b56b7b310b
|
Merge pull request #266 from RoganGrant/master
Northwestern University Genomics Nodes (new add)
|
2021-09-06 13:26:49 -05:00 |
|
James A. Fellows Yates
|
39f54db097
|
Update container cache
|
2021-09-05 12:09:02 +02:00 |
|
James A. Fellows Yates
|
59a0901b68
|
Add library merge steps to have overhead
|
2021-09-05 12:07:53 +02:00 |
|
Rogan Grant
|
54298ca0f7
|
Merge branch 'nf-core:master' into master
|
2021-09-04 15:37:03 -05:00 |
|
rogangrant
|
a8d06ee356
|
Revert "Forgot a slash :("
This reverts commit d5601fea84 .
|
2021-09-04 15:36:05 -05:00 |
|
Rogan Grant
|
d5601fea84
|
Forgot a slash :(
|
2021-09-04 15:19:32 -05:00 |
|
Rogan Grant
|
2c5e454d16
|
Updated iGenomes path for odd local structure on Quest
|
2021-09-04 15:13:41 -05:00 |
|
James A. Fellows Yates
|
94cbb031c6
|
Update eva.config
|
2021-08-30 13:29:44 +02:00 |
|
James A. Fellows Yates
|
5fbd938bc1
|
Export user env too
|
2021-08-27 10:08:20 +02:00 |
|
James A. Fellows Yates
|
bcb844f896
|
Merge pull request #268 from jfy133/master
Delete SHH profiles due to decommissioning
|
2021-08-23 14:08:13 +02:00 |
|
James Fellows Yates
|
59af7f0eee
|
Delete SHH profiles due to decommissioning
|
2021-08-20 10:15:39 +02:00 |
|
James A. Fellows Yates
|
6701354060
|
Add genotyping_ug to SGE fixes
|
2021-08-20 10:11:11 +02:00 |
|
James Fellows Yates
|
b0e344846d
|
Changes after code review from @aidaanva
|
2021-08-04 10:37:49 +02:00 |
|
James Fellows Yates
|
76fc461670
|
Try new strategy for SGE/JAVA bs
|
2021-08-04 10:14:56 +02:00 |
|
Rogan Grant
|
f793ffaace
|
Updated iGenomes location
|
2021-08-03 15:10:54 -05:00 |
|
James A. Fellows Yates
|
00491de038
|
Update eva.config
|
2021-08-03 13:54:14 +02:00 |
|
Rogan Grant
|
24a2949fe2
|
Had executor options in wrong spot :(
|
2021-07-28 18:05:45 -05:00 |
|
Rogan Grant
|
6862fb8bfd
|
testing ternary operatory
|
2021-07-28 18:01:03 -05:00 |
|
Rogan Grant
|
bcc69fe83c
|
Enable use of himem nodes
|
2021-07-28 17:54:51 -05:00 |
|
Rogan Grant
|
ac11ca5568
|
Remove echo used for testing
|
2021-07-28 16:48:08 -05:00 |
|
Rogan Grant
|
3dd4f16d09
|
Added indicator for testing
|
2021-07-28 14:01:12 -05:00 |
|
Rogan Grant
|
09ed4d54b9
|
Just make command a single line for simplicity
|
2021-07-28 13:52:26 -05:00 |
|
Rogan Grant
|
09e0ea2674
|
typo
|
2021-07-28 13:46:40 -05:00 |
|
Rogan Grant
|
e1e0810d1b
|
Clean up module loading script
|
2021-07-28 13:44:48 -05:00 |
|
Rogan Grant
|
e2c566ed13
|
Testing "automounts"
|
2021-07-28 13:38:06 -05:00 |
|
Rogan Grant
|
f104250ff4
|
Removed comment
|
2021-07-28 13:34:49 -05:00 |
|
Rogan Grant
|
9df267a192
|
Merged duplicate params
|
2021-07-28 13:27:17 -05:00 |
|
Rogan Grant
|
ff6823ec1d
|
removed unnecessary space
|
2021-07-28 13:22:52 -05:00 |
|
Rogan Grant
|
9957e9eea1
|
Version 1 of custom config with queue-switching for long jobs and module loading
|
2021-07-28 13:11:02 -05:00 |
|
Barry digby
|
70b2644c9a
|
.
|
2021-07-27 17:39:37 +01:00 |
|
Barry digby
|
2b6e80561a
|
Merge branch 'master' of https://github.com/nf-core/configs into
|
2021-07-27 17:13:17 +01:00 |
|
Barry digby
|
4f962260d0
|
s
|
2021-07-27 17:08:53 +01:00 |
|
Barry digby
|
04c0da5a2f
|
nuig confg (lugh)
|
2021-07-27 17:05:27 +01:00 |
|
ameynert
|
2112168420
|
Set BLASTDB_LMDB_MAP_SIZE
This environment variable needs to be set in order to prevent memory allocation errors in the MAKEBLASTDB process.
|
2021-07-22 15:07:19 +01:00 |
|
ameynert
|
4ceb369af5
|
eddie.config for viralrecon pipeline
|
2021-07-21 12:10:43 +01:00 |
|
Maxime U. Garcia
|
30e058abf0
|
Merge branch 'master' into master_kraken
|
2021-07-20 09:26:56 +02:00 |
|
Harshil Patel
|
962dca7a46
|
Add ARTIC v1200 primers to genomes config for viralrecon
|
2021-07-12 12:24:49 +01:00 |
|
Gisela Gabernet
|
e2088a008d
|
Merge branch 'master' into master
|
2021-07-03 12:24:42 +02:00 |
|
ggabernet
|
ee2e8392ab
|
add aws_tower profile
|
2021-07-03 12:17:21 +02:00 |
|
Harshil Patel
|
69f63a006d
|
Merge pull request #254 from drpatelh/articv4
Add ARTIC v4 primers to genomes config for viralrecon
|
2021-07-01 12:31:02 +01:00 |
|
Gisela Gabernet
|
aae0f0bf07
|
Merge pull request #255 from ggabernet/master
update cfc configs
|
2021-07-01 10:59:25 +02:00 |
|
ggabernet
|
d59d099fe8
|
remove load module in cfc configs
|
2021-07-01 10:52:54 +02:00 |
|
James A. Fellows Yates
|
5f4b915ae8
|
Update eva.config
|
2021-06-29 11:31:00 +02:00 |
|
Harshil Patel
|
93cfc48afd
|
Add ARTIC v4 primers to genomes config
|
2021-06-21 21:04:16 +01:00 |
|
Edmund Miller
|
21e1037e0c
|
docs(sysbio): Add rnaseq specific docs
|
2021-06-17 09:18:45 -05:00 |
|
Edmund Miller
|
e35c5fd1d8
|
fix(sysbio): Add nf-core params
|
2021-06-17 08:32:31 -05:00 |
|