millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-23 08:49:54 +00:00
Code Issues Releases Packages Activity
1517 commits 4 branches 0 tags 1.9 MiB
Commit graph

1517 commits

This branch
This branch
All branches
Author SHA1 Message Date
James A. Fellows Yates
530da4d8c0
Merge pull request #167 from jfy133/master 
Bump number of eager @shh retries to account for deep sequencing data
 2020-06-30 11:33:29 +02:00
James A. Fellows Yates
c52428cd72
Bump number of eager @shh retries to account for deep sequencing data 2020-06-30 08:19:25 +02:00
Alexander Peltzer
2801f25657
Merge pull request #166 from adrlar/master 
Fixing an autoMounts bug for icr_davros
 2020-06-26 17:52:05 +02:00
Adrian
5b890d571a adding icr_davros to list 2020-06-26 13:40:15 +01:00
Adrian
e375ad97ad reverting autoMounts due to bug 2020-06-26 13:39:37 +01:00
Phil Ewels
a7c8cbc410 Fix new CI test 2020-06-26 14:30:53 +02:00
Phil Ewels
b587a2d031 Remove env vars from CI test and try running -show-profiles 2020-06-26 14:24:51 +02:00
Phil Ewels
28027a8489 Prince config - use function to check if env SCRATCH is set 2020-06-26 14:22:32 +02:00
Phil Ewels
da46b1cd9a Remove --custom_config_base from CI test command 2020-06-26 14:13:49 +02:00
Phil Ewels
824d9b86bc Set params.custom_config_base in nextflow.config 2020-06-26 14:08:24 +02:00
Phil Ewels
cd9fbb22dc
Merge pull request #161 from ewels/uct_hpc 
Update UCT hex -> hpc
 2020-06-22 09:18:43 +02:00
Alexander Peltzer
7774a6a8f3
Merge pull request #163 from piotr-faba-ardigen/add_bi_config 
resolve  #162 bug
 2020-06-19 08:57:44 +02:00
Piotr Faba
cb26bef3f3 resolve #162 bug 2020-06-18 20:30:05 +02:00
Alexander Peltzer
bb7f67e2b5
Merge pull request #160 from ewels/master 
Merge czbiohub_aws_highpriority profile into czbiohub_aws
 2020-06-17 19:20:07 +02:00
Phil Ewels
18a1a319ec More uct_hex references 2020-06-17 15:25:07 +02:00
Phil Ewels
29f5fa6ce4 uct_hpc docs, readme 2020-06-17 15:22:42 +02:00
Phil Ewels
53e118210f Copy over HPC config 2020-06-17 15:20:22 +02:00
Phil Ewels
dbfcd7c5e9 Rename uct_hex > uct_hpc 2020-06-17 15:17:22 +02:00
Phil Ewels
17824d2d62 Merge czbiohub_aws_highpriority profile into czbiohub_aws 2020-06-16 15:20:39 +02:00
Phil Ewels
e091ec259e
Merge pull request #158 from phue/singularity_global 
CBE: don't load singularity module
 2020-06-05 12:20:39 +02:00
phue
6d356cc918 CBE: don't load singularity module 
singularity is now installed from CentOS repos, the environment module will be removed
 2020-06-05 12:07:26 +02:00
Alexander Peltzer
adf90f3994
Merge pull request #146 from adrlar/master 
Adding config for ICR davros cluster
 2020-06-03 20:09:49 +02:00
Adrian
3e4db8c845 adding icr_davros to test 2020-06-03 14:55:58 +01:00
Alexander Peltzer
f877644059
Merge branch 'master' into master 2020-05-29 11:43:47 +02:00
Alexander Peltzer
0d5899eb26
Merge pull request #157 from nf-core/bi-docs 
Add BI to main readme.md
 2020-05-28 10:25:19 +02:00
Alexander Peltzer
dd56355c7c
Update bi.md 
No trailing spaces it said.
 2020-05-28 10:18:16 +02:00
Alexander Peltzer
f4df5b5a75
Add BI Docs 2020-05-28 10:16:22 +02:00
Alexander Peltzer
0efa9f248e
Add BI to main readme.md 2020-05-28 10:12:50 +02:00
Alexander Peltzer
32ec230098
Merge pull request #156 from piotr-faba-ardigen/add_bi_config 
Add bi config
 2020-05-27 21:03:15 +02:00
Piotr Faba
f139750bf4 print the error message before throwing Exception 2020-05-27 19:14:43 +02:00
Piotr Faba
3c695ba71c test error display 2020-05-27 18:00:47 +02:00
Alexander Peltzer
6011419454
Merge pull request #154 from jfy133/master 
Update SHH nf-core/eager group-specific profiles
 2020-05-27 17:52:09 +02:00
Alexander Peltzer
27f3207cb9
Merge pull request #155 from piotr-faba-ardigen/add_bi_config 
Add BI internal config
 2020-05-27 17:49:41 +02:00
Piotr Faba
18d8edb046 add description and profile 2020-05-27 17:41:19 +02:00
Piotr Faba
f5e2a9f9f3 try without dummy.config: use relative path 2020-05-27 16:55:37 +02:00
Piotr Faba
3ad0003979 test without dummy config 2020-05-27 16:46:08 +02:00
Piotr Faba
1a9db371c3 remove echos 2020-05-27 16:43:32 +02:00
Piotr Faba
ac47d020cb debug: continue 2020-05-27 16:38:11 +02:00
Piotr Faba
ff5fdd097b debug 2020-05-27 16:35:55 +02:00
Piotr Faba
ab3070582e Fix paths to dummy.config 2020-05-27 16:32:19 +02:00
Piotr Faba
66f191a1cf declate NXF_GLOBAL_CONFIG in ci 2020-05-27 16:30:00 +02:00
Piotr Faba
2685275952 switch include off 2020-05-27 16:24:47 +02:00
Piotr Faba
c31b03108c retry without Exception 2020-05-27 16:22:56 +02:00
Piotr Faba
1354ae4063 add bi config 2020-05-27 16:19:15 +02:00
James A. Fellows Yates
0943ba088a
Mention SHH EAGER group-specific profiles 2020-05-26 11:14:42 +02:00
James A. Fellows Yates
d070ed70d1
Update BWA settings based on feedback 2020-05-26 11:11:42 +02:00
James A. Fellows Yates
e31e781f29
Remove debugging 2020-05-26 11:07:06 +02:00
Harshil Patel
5981e5ec27
Merge pull request #153 from FriederikeHanssen/cfc_scratch 
Add scratch = true to avoid writing of intermediate file to /tmp
 2020-05-22 15:48:00 +01:00
James A. Fellows Yates
ff915ee504
Update shh.config 2020-05-12 12:47:59 +02:00
James A. Fellows Yates
8225e07819
Condensed base params and added names for debugging 2020-05-12 12:47:25 +02:00