1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-10 20:13:09 +00:00
Commit graph

415 commits

Author SHA1 Message Date
James A. Fellows Yates
7353fb257d
Merge pull request #380 from jfy133/taxprofiler
Add MAG @ EVA profile
2022-06-03 12:54:47 +02:00
James A. Fellows Yates
97d57539e3
Apply suggestions from code review
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
2022-06-03 12:51:20 +02:00
James Fellows Yates
5a67eba04c Add MAG @ EVA profile 2022-06-03 12:41:08 +02:00
Åshild J. Vågene
1d23ba9264
change name of tmp dir to .tmp_nfcore 2022-06-02 16:40:29 +02:00
Åshild J. Vågene
0f6fb0c10d
Update mjolnir_globe.md 2022-06-02 16:00:22 +02:00
Åshild J. Vågene
e871dc87f9
Update mjolnir_globe.md 2022-06-02 15:59:11 +02:00
Åshild J. Vågene
940077190b
Update mjolnir_globe.md 2022-06-02 15:38:40 +02:00
Åshild J. Vågene
2988e33576
Create mjolnir_globe.md 2022-06-02 15:38:07 +02:00
Nicolas Vannieuwkerke
867dcabd97 Fix type in VSC UGent 2022-05-20 10:36:07 +02:00
Nicolas Vannieuwkerke
8432e4d1dc typo 2022-05-20 09:49:42 +02:00
Nicolas Vannieuwkerke
fa39478a2d prettier 2022-05-20 09:49:04 +02:00
Nicolas Vannieuwkerke
c2b26a734d automated the internal cache dir location for singularity 2022-05-20 09:48:19 +02:00
nvnieuwk
b2f7538b33
Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
2022-05-20 09:42:31 +02:00
nvnieuwk
a3583262c2
Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
2022-05-20 09:41:02 +02:00
nvnieuwk
dba85e53fa
Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
2022-05-20 09:40:55 +02:00
Nicolas Vannieuwkerke
a2d77df2ee added default scratch location to markdown file 2022-05-20 09:32:14 +02:00
Nicolas Vannieuwkerke
2f74c91145 prettier 2022-05-20 09:18:33 +02:00
Nicolas Vannieuwkerke
cc86e6b270 Added the VSC UGent profile 2022-05-20 09:12:18 +02:00
Sarah Guinchard
be9711731a
Merge pull request #375 from nf-core/ifb_core-config-update
Ifb core config update
2022-05-13 14:45:44 +02:00
sofstam
ca4cdcffee Fix typo 2022-05-12 15:07:30 +02:00
Sarah Guinchard
84457cc655 Update documentation 2022-05-12 11:01:36 +02:00
sofstam
c59149d64c Update docs for hasta config 2022-05-12 10:47:03 +02:00
James Fellows Yates
e1f780d976 Add taxprofiler for eVA 2022-05-12 07:54:17 +01:00
James Fellows Yates
4885b672b1 Prettier 2022-04-25 11:46:32 +02:00
Alex Rajewski
766eb450be
usage notes 2022-04-22 10:23:19 -07:00
James A. Fellows Yates
b0c9ac9be8
Update eva.md 2022-03-28 09:02:26 +02:00
b97pla
9a6cdfc21e removed process-specific requirements for sarek, request miarka high-mem node 2022-03-24 14:25:43 +01:00
b97pla
5466d927f1 added requirements for uppmax cluster miarka 2022-03-23 15:29:40 +01:00
Edmund Miller
6c37bf3b20
style: Run prettier 2022-03-21 19:23:28 -05:00
James A. Fellows Yates
962d86d604
Merge pull request #346 from sagc-bioinformatics/sahmri
Added SAHMRI profile
2022-03-18 13:01:36 +01:00
James A. Fellows Yates
a2e2e94333
Merge pull request #344 from njspix/vai
Add VAI configuration
2022-03-14 14:36:00 +01:00
Nathan Watson-Haigh
dba3fb4c1d Added SAHMRI HPC profile docs 2022-03-13 00:05:34 +10:30
Nathan Watson-Haigh
b638694bd0 Added SAHMRI HPC profile 2022-03-12 21:17:33 +10:30
Matiss
6c79c75eec
Merge pull request #290 from maxozo/master
added leicester profile
2022-03-11 09:21:09 +00:00
Spix
429c7b4fa8 initial commit 2022-03-07 15:01:46 -05:00
Alexander Peltzer
d0d86bfb2a
Merge pull request #339 from jfy133/rnaseq_mpcdf
Add RNASEQ specific config for MPCDF
2022-03-07 13:59:08 +01:00
James A. Fellows Yates
975fca6721
Apply suggestions from code review 2022-03-07 13:51:00 +01:00
Natalia Zajac
c2e0c9e6d4 Update on md file 2022-03-07 12:59:56 +01:00
Natalia Zajac
e07a0e548e Config Addition 2022-03-04 12:16:01 +01:00
James Fellows Yates
70318c3b2a Tweak eager settigs 2022-03-03 14:29:30 +01:00
James Fellows Yates
7112e74b73 Tweak settings based on latest batch specs 2022-03-03 13:43:40 +01:00
James Fellows Yates
e649bfbb2e Linting 2022-03-03 12:26:14 +01:00
James Fellows Yates
94f8cbcb84 Add rnaseq pipeline specific config for MPCDF 2022-03-03 12:20:02 +01:00
James A. Fellows Yates
121452afad
Linting 2022-03-02 08:51:20 +01:00
James A. Fellows Yates
15a0571eae
Fix markdown 2022-03-02 08:50:42 +01:00
James A. Fellows Yates
adcfe22f98
Remove draco entry to MPCDF profiles due to decomissioning 2022-03-02 08:38:55 +01:00
James A. Fellows Yates
a6c12d8edc
Merge pull request #322 from U-BDS/master
Add UAB Cheaha profile
2022-03-01 08:29:54 +01:00
James A. Fellows Yates
4fbebac9b3
Merge pull request #304 from PCQuilis/patch-1
Create marvin.md added marvin config
2022-02-28 15:03:07 +01:00
James A. Fellows Yates
d6f5209afc
Update marvin.md 2022-02-28 15:01:12 +01:00
Combiz Khozoie
a77f718ae2
Merge pull request #330 from nf-core/master
Pulling master to branch
2022-02-11 14:18:01 +00:00
Matthias Hörtenhuber
b98ab26662 fix markdownlint errors 2022-02-11 14:09:16 +01:00
Combiz Khozoie
34d9e7a967
Update imperial.md
Updated docs to reflect use of internal profiles
2022-02-11 00:08:08 +00:00
Combiz Khozoie
5aa1abda26
Delete imperial_mb.md
Deprecated in favour of internal profiles within the single imperial.config
2022-02-11 00:07:05 +00:00
Combiz Khozoie
14c7662762
Update imperial.md
Updated docs to reflect restructuring for internal profiles
2022-02-10 23:49:43 +00:00
phue
a6dd3aa0f1 cbe: update recommended nextflow version in docs
otherwise, the new anaconda requirements will cause conflicts
2022-02-04 10:21:52 +01:00
Lara Ianov
f876227a38 added note on screen, conda, and interactive partitions 2022-01-28 12:18:11 -06:00
Austyn Trull
06541411dd Initial commit of cheaha profile 2022-01-28 11:37:42 -06:00
Kevin Brick
afb6fbb767
Trailing spaces 2021-12-17 00:46:50 -05:00
Kevin Brick
05f7b59573
Update nihbiowulf.md 2021-12-17 00:44:39 -05:00
Kevin Brick
9cf4f69ff3
Add files via upload 2021-12-17 00:37:11 -05:00
praveenraj2018
00a3ed0fa6
Formatting 2021-12-14 21:24:18 +01:00
Praveen
b4d5330c0e Added rnavar pipeline config for Munin 2021-12-14 03:52:37 +01:00
PCQ
a72f1a243c
Create marvin.md 2021-12-10 17:39:32 +01:00
Venkat Malladi
d722e7206e Fix readme to remove blob account. 2021-11-18 18:06:54 -06:00
Phil Ewels
4785ceccba
Merge pull request #245 from ikeller/unibe_ibu
Unibe ibu
2021-11-19 00:56:25 +01:00
Phil Ewels
b25bd1ce42
Update docs/azurebatch.md 2021-11-19 00:54:39 +01:00
Venkat Malladi
ed4c1d5f22 Remove work_dir option. 2021-11-18 17:52:24 -06:00
Phil Ewels
286fa6753a
Apply suggestions from code review 2021-11-19 00:07:33 +01:00
Phil Ewels
a26b3bf1e3
Merge branch 'master' into unibe_ibu 2021-11-19 00:02:30 +01:00
Venkat Malladi
f25dc57f00 Fix headers. 2021-11-18 15:50:12 -06:00
Venkat Malladi
1dacc2f3fe Fix liniting errors in headers. 2021-11-18 15:49:08 -06:00
Venkat Malladi
845a9ce971 Update Readme with more inforamtion on the options. 2021-11-18 15:47:27 -06:00
Venkat Malladi
219244f1b4 Add in sample datastorage for Illumina Platinum genomes. 2021-11-18 15:28:34 -06:00
Venkat Malladi
237f91a3b7 Add in minmum config for azure. 2021-11-18 14:51:39 -06:00
Harshil Patel
a098ad9e06 Add Chris as main contact at The Crick 2021-11-03 11:11:05 +00:00
Matiss Ozols
5222d7ed9b added leicester profile 2021-10-21 19:08:06 +01:00
Matiss Ozols
1f58ea42c7 added leicester profile 2021-10-21 19:06:03 +01:00
Matiss Ozols
98a69683c2 added leicester profile 2021-10-21 19:04:48 +01:00
Matiss Ozols
f8b932ae2d added leicester profile 2021-10-21 18:32:57 +01:00
James A. Fellows Yates
73b6b74c69
Merge pull request #279 from pierrespc/master
Added Configuration files for running in Maestro HPC at Pasteur Institute, Paris
2021-10-08 19:15:47 +02:00
James A. Fellows Yates
98bbc2b744
Linting 2021-10-08 14:11:39 +02:00
James A. Fellows Yates
b26e495e19
Apply suggestions from code review 2021-10-08 14:08:51 +02:00
pierrespc
2d102eafbc format docs 2021-10-08 13:46:47 +02:00
pierrespc
035ab61f61 added unlimitedtime profile to maestro; changed cache for bwa process 2021-10-08 09:05:46 +02:00
pierrespc
1621585558 improving documentation 2021-10-04 16:08:33 +02:00
pierrespc
e5d4a357c5 clean doc 2021-10-04 15:08:01 +02:00
pierrespc
136fd44e0c corrected docs/maestro.config 2021-09-29 13:50:56 +02:00
James A. Fellows Yates
e8b48416bc
Update docs/alice.md 2021-09-28 12:52:31 +02:00
Bjørn Peare Bartholdy
ad83430632
Update docs/alice.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2021-09-28 12:43:54 +02:00
Bjørn Peare Bartholdy
197bd6cfb1
Merge branch 'nf-core:master' into master 2021-09-28 12:09:50 +02:00
bbartholdy
b6ccb46383 add ALICE profile 2021-09-28 12:08:27 +02:00
Mei Wu
c2d74b290a fix md 2021-09-27 16:25:02 +02:00
Mei Wu
a8a2027f70
Merge branch 'master' into hasta 2021-09-27 16:12:23 +02:00
Mei Wu
ae0adb056f initial commit 2021-09-27 16:05:19 +02:00
pierrespc
3b593d46ec merged two pasteur config files for maestro 2021-09-20 15:14:50 +02:00
Harshil Patel
5068e4806f
Merge pull request #271 from theoportlock/master
Adds Rosalind config for KCL!
2021-09-17 13:36:19 +01:00
theoportlock
0fd5265f7b Updates the README 2021-09-17 13:21:38 +02:00
pierrespc
b9682bbc91 requires files edited 2021-09-16 12:53:17 +02:00
Marc Trunjer Kusk Nielsen
9a8644ef43
Update computerome.md 2021-09-15 11:10:02 +02:00
Marc Trunjer Kusk Nielsen
cf899a2a4e
Update computerome.md 2021-09-13 08:48:27 +02:00