James A. Fellows Yates
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7353fb257d
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Merge pull request #380 from jfy133/taxprofiler
Add MAG @ EVA profile
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2022-06-03 12:54:47 +02:00 |
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James A. Fellows Yates
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97d57539e3
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Apply suggestions from code review
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
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2022-06-03 12:51:20 +02:00 |
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James Fellows Yates
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5a67eba04c
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Add MAG @ EVA profile
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2022-06-03 12:41:08 +02:00 |
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Åshild J. Vågene
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1d23ba9264
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change name of tmp dir to .tmp_nfcore
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2022-06-02 16:40:29 +02:00 |
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Åshild J. Vågene
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0f6fb0c10d
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Update mjolnir_globe.md
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2022-06-02 16:00:22 +02:00 |
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Åshild J. Vågene
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e871dc87f9
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Update mjolnir_globe.md
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2022-06-02 15:59:11 +02:00 |
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Åshild J. Vågene
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940077190b
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Update mjolnir_globe.md
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2022-06-02 15:38:40 +02:00 |
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Åshild J. Vågene
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2988e33576
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Create mjolnir_globe.md
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2022-06-02 15:38:07 +02:00 |
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Nicolas Vannieuwkerke
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867dcabd97
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Fix type in VSC UGent
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2022-05-20 10:36:07 +02:00 |
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Nicolas Vannieuwkerke
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8432e4d1dc
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typo
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2022-05-20 09:49:42 +02:00 |
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Nicolas Vannieuwkerke
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fa39478a2d
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prettier
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2022-05-20 09:49:04 +02:00 |
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Nicolas Vannieuwkerke
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c2b26a734d
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automated the internal cache dir location for singularity
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2022-05-20 09:48:19 +02:00 |
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nvnieuwk
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b2f7538b33
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Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-20 09:42:31 +02:00 |
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nvnieuwk
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a3583262c2
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Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-20 09:41:02 +02:00 |
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nvnieuwk
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dba85e53fa
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Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-20 09:40:55 +02:00 |
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Nicolas Vannieuwkerke
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a2d77df2ee
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added default scratch location to markdown file
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2022-05-20 09:32:14 +02:00 |
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Nicolas Vannieuwkerke
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2f74c91145
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prettier
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2022-05-20 09:18:33 +02:00 |
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Nicolas Vannieuwkerke
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cc86e6b270
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Added the VSC UGent profile
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2022-05-20 09:12:18 +02:00 |
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Sarah Guinchard
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be9711731a
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Merge pull request #375 from nf-core/ifb_core-config-update
Ifb core config update
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2022-05-13 14:45:44 +02:00 |
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sofstam
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ca4cdcffee
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Fix typo
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2022-05-12 15:07:30 +02:00 |
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Sarah Guinchard
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84457cc655
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Update documentation
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2022-05-12 11:01:36 +02:00 |
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sofstam
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c59149d64c
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Update docs for hasta config
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2022-05-12 10:47:03 +02:00 |
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James Fellows Yates
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e1f780d976
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Add taxprofiler for eVA
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2022-05-12 07:54:17 +01:00 |
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James Fellows Yates
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4885b672b1
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Prettier
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2022-04-25 11:46:32 +02:00 |
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Alex Rajewski
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766eb450be
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usage notes
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2022-04-22 10:23:19 -07:00 |
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James A. Fellows Yates
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b0c9ac9be8
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Update eva.md
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2022-03-28 09:02:26 +02:00 |
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b97pla
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9a6cdfc21e
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removed process-specific requirements for sarek, request miarka high-mem node
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2022-03-24 14:25:43 +01:00 |
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b97pla
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5466d927f1
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added requirements for uppmax cluster miarka
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2022-03-23 15:29:40 +01:00 |
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Edmund Miller
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6c37bf3b20
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style: Run prettier
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2022-03-21 19:23:28 -05:00 |
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James A. Fellows Yates
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962d86d604
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Merge pull request #346 from sagc-bioinformatics/sahmri
Added SAHMRI profile
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2022-03-18 13:01:36 +01:00 |
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James A. Fellows Yates
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a2e2e94333
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Merge pull request #344 from njspix/vai
Add VAI configuration
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2022-03-14 14:36:00 +01:00 |
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Nathan Watson-Haigh
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dba3fb4c1d
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Added SAHMRI HPC profile docs
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2022-03-13 00:05:34 +10:30 |
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Nathan Watson-Haigh
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b638694bd0
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Added SAHMRI HPC profile
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2022-03-12 21:17:33 +10:30 |
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Matiss
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6c79c75eec
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Merge pull request #290 from maxozo/master
added leicester profile
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2022-03-11 09:21:09 +00:00 |
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Spix
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429c7b4fa8
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initial commit
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2022-03-07 15:01:46 -05:00 |
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Alexander Peltzer
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d0d86bfb2a
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Merge pull request #339 from jfy133/rnaseq_mpcdf
Add RNASEQ specific config for MPCDF
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2022-03-07 13:59:08 +01:00 |
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James A. Fellows Yates
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975fca6721
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Apply suggestions from code review
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2022-03-07 13:51:00 +01:00 |
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Natalia Zajac
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c2e0c9e6d4
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Update on md file
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2022-03-07 12:59:56 +01:00 |
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Natalia Zajac
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e07a0e548e
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Config Addition
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2022-03-04 12:16:01 +01:00 |
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James Fellows Yates
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70318c3b2a
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Tweak eager settigs
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2022-03-03 14:29:30 +01:00 |
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James Fellows Yates
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7112e74b73
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Tweak settings based on latest batch specs
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2022-03-03 13:43:40 +01:00 |
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James Fellows Yates
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e649bfbb2e
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Linting
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2022-03-03 12:26:14 +01:00 |
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James Fellows Yates
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94f8cbcb84
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Add rnaseq pipeline specific config for MPCDF
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2022-03-03 12:20:02 +01:00 |
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James A. Fellows Yates
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121452afad
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Linting
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2022-03-02 08:51:20 +01:00 |
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James A. Fellows Yates
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15a0571eae
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Fix markdown
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2022-03-02 08:50:42 +01:00 |
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James A. Fellows Yates
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adcfe22f98
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Remove draco entry to MPCDF profiles due to decomissioning
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2022-03-02 08:38:55 +01:00 |
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James A. Fellows Yates
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a6c12d8edc
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Merge pull request #322 from U-BDS/master
Add UAB Cheaha profile
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2022-03-01 08:29:54 +01:00 |
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James A. Fellows Yates
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4fbebac9b3
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Merge pull request #304 from PCQuilis/patch-1
Create marvin.md added marvin config
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2022-02-28 15:03:07 +01:00 |
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James A. Fellows Yates
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d6f5209afc
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Update marvin.md
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2022-02-28 15:01:12 +01:00 |
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Combiz Khozoie
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a77f718ae2
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Merge pull request #330 from nf-core/master
Pulling master to branch
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2022-02-11 14:18:01 +00:00 |
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Matthias Hörtenhuber
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b98ab26662
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fix markdownlint errors
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2022-02-11 14:09:16 +01:00 |
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Combiz Khozoie
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34d9e7a967
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Update imperial.md
Updated docs to reflect use of internal profiles
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2022-02-11 00:08:08 +00:00 |
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Combiz Khozoie
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5aa1abda26
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Delete imperial_mb.md
Deprecated in favour of internal profiles within the single imperial.config
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2022-02-11 00:07:05 +00:00 |
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Combiz Khozoie
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14c7662762
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Update imperial.md
Updated docs to reflect restructuring for internal profiles
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2022-02-10 23:49:43 +00:00 |
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phue
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a6dd3aa0f1
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cbe: update recommended nextflow version in docs
otherwise, the new anaconda requirements will cause conflicts
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2022-02-04 10:21:52 +01:00 |
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Lara Ianov
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f876227a38
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added note on screen, conda, and interactive partitions
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2022-01-28 12:18:11 -06:00 |
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Austyn Trull
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06541411dd
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Initial commit of cheaha profile
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2022-01-28 11:37:42 -06:00 |
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Kevin Brick
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afb6fbb767
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Trailing spaces
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2021-12-17 00:46:50 -05:00 |
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Kevin Brick
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05f7b59573
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Update nihbiowulf.md
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2021-12-17 00:44:39 -05:00 |
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Kevin Brick
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9cf4f69ff3
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Add files via upload
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2021-12-17 00:37:11 -05:00 |
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praveenraj2018
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00a3ed0fa6
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Formatting
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2021-12-14 21:24:18 +01:00 |
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Praveen
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b4d5330c0e
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Added rnavar pipeline config for Munin
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2021-12-14 03:52:37 +01:00 |
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PCQ
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a72f1a243c
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Create marvin.md
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2021-12-10 17:39:32 +01:00 |
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Venkat Malladi
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d722e7206e
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Fix readme to remove blob account.
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2021-11-18 18:06:54 -06:00 |
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Phil Ewels
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4785ceccba
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Merge pull request #245 from ikeller/unibe_ibu
Unibe ibu
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2021-11-19 00:56:25 +01:00 |
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Phil Ewels
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b25bd1ce42
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Update docs/azurebatch.md
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2021-11-19 00:54:39 +01:00 |
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Venkat Malladi
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ed4c1d5f22
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Remove work_dir option.
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2021-11-18 17:52:24 -06:00 |
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Phil Ewels
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286fa6753a
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Apply suggestions from code review
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2021-11-19 00:07:33 +01:00 |
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Phil Ewels
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a26b3bf1e3
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Merge branch 'master' into unibe_ibu
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2021-11-19 00:02:30 +01:00 |
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Venkat Malladi
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f25dc57f00
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Fix headers.
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2021-11-18 15:50:12 -06:00 |
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Venkat Malladi
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1dacc2f3fe
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Fix liniting errors in headers.
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2021-11-18 15:49:08 -06:00 |
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Venkat Malladi
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845a9ce971
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Update Readme with more inforamtion on the options.
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2021-11-18 15:47:27 -06:00 |
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Venkat Malladi
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219244f1b4
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Add in sample datastorage for Illumina Platinum genomes.
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2021-11-18 15:28:34 -06:00 |
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Venkat Malladi
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237f91a3b7
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Add in minmum config for azure.
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2021-11-18 14:51:39 -06:00 |
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Harshil Patel
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a098ad9e06
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Add Chris as main contact at The Crick
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2021-11-03 11:11:05 +00:00 |
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Matiss Ozols
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5222d7ed9b
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added leicester profile
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2021-10-21 19:08:06 +01:00 |
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Matiss Ozols
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1f58ea42c7
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added leicester profile
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2021-10-21 19:06:03 +01:00 |
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Matiss Ozols
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98a69683c2
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added leicester profile
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2021-10-21 19:04:48 +01:00 |
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Matiss Ozols
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f8b932ae2d
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added leicester profile
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2021-10-21 18:32:57 +01:00 |
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James A. Fellows Yates
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73b6b74c69
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Merge pull request #279 from pierrespc/master
Added Configuration files for running in Maestro HPC at Pasteur Institute, Paris
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2021-10-08 19:15:47 +02:00 |
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James A. Fellows Yates
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98bbc2b744
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Linting
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2021-10-08 14:11:39 +02:00 |
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James A. Fellows Yates
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b26e495e19
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Apply suggestions from code review
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2021-10-08 14:08:51 +02:00 |
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pierrespc
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2d102eafbc
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format docs
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2021-10-08 13:46:47 +02:00 |
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pierrespc
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035ab61f61
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added unlimitedtime profile to maestro; changed cache for bwa process
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2021-10-08 09:05:46 +02:00 |
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pierrespc
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1621585558
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improving documentation
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2021-10-04 16:08:33 +02:00 |
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pierrespc
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e5d4a357c5
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clean doc
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2021-10-04 15:08:01 +02:00 |
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pierrespc
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136fd44e0c
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corrected docs/maestro.config
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2021-09-29 13:50:56 +02:00 |
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James A. Fellows Yates
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e8b48416bc
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Update docs/alice.md
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2021-09-28 12:52:31 +02:00 |
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Bjørn Peare Bartholdy
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ad83430632
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Update docs/alice.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2021-09-28 12:43:54 +02:00 |
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Bjørn Peare Bartholdy
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197bd6cfb1
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Merge branch 'nf-core:master' into master
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2021-09-28 12:09:50 +02:00 |
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bbartholdy
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b6ccb46383
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add ALICE profile
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2021-09-28 12:08:27 +02:00 |
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Mei Wu
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c2d74b290a
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fix md
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2021-09-27 16:25:02 +02:00 |
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Mei Wu
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a8a2027f70
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Merge branch 'master' into hasta
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2021-09-27 16:12:23 +02:00 |
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Mei Wu
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ae0adb056f
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initial commit
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2021-09-27 16:05:19 +02:00 |
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pierrespc
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3b593d46ec
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merged two pasteur config files for maestro
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2021-09-20 15:14:50 +02:00 |
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Harshil Patel
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5068e4806f
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Merge pull request #271 from theoportlock/master
Adds Rosalind config for KCL!
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2021-09-17 13:36:19 +01:00 |
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theoportlock
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0fd5265f7b
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Updates the README
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2021-09-17 13:21:38 +02:00 |
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pierrespc
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b9682bbc91
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requires files edited
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2021-09-16 12:53:17 +02:00 |
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Marc Trunjer Kusk Nielsen
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9a8644ef43
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Update computerome.md
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2021-09-15 11:10:02 +02:00 |
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Marc Trunjer Kusk Nielsen
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cf899a2a4e
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Update computerome.md
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2021-09-13 08:48:27 +02:00 |
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