James Fellows Yates
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c40ebb9acf
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Add overhead for get_software_versions
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2022-06-03 14:21:41 +02:00 |
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James Fellows Yates
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df0429ce9d
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Replace oracle specific _JAVA_OPTIONS to portable JAVA_TOOLS_OPTIONS
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2022-06-03 14:20:39 +02:00 |
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Phil Ewels
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b51059a3ae
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Merge branch 'master' into config_ucph-mjolnir_ash
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2022-06-03 13:21:36 +02:00 |
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James A. Fellows Yates
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7353fb257d
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Merge pull request #380 from jfy133/taxprofiler
Add MAG @ EVA profile
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2022-06-03 12:54:47 +02:00 |
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James A. Fellows Yates
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24e165c52d
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Update pipeline/mag.config
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2022-06-03 12:51:47 +02:00 |
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James A. Fellows Yates
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97d57539e3
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Apply suggestions from code review
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
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2022-06-03 12:51:20 +02:00 |
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James Fellows Yates
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5a67eba04c
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Add MAG @ EVA profile
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2022-06-03 12:41:08 +02:00 |
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Åshild J. Vågene
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1d23ba9264
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change name of tmp dir to .tmp_nfcore
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2022-06-02 16:40:29 +02:00 |
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Åshild J. Vågene
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2b67d3aaab
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Update main.yml
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2022-06-02 16:30:35 +02:00 |
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Åshild J. Vågene
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62dfda8103
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add mjolnir_globe md
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2022-06-02 16:07:47 +02:00 |
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Åshild J. Vågene
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7a63e0a2ec
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mjolnir_globe config added
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2022-06-02 16:05:28 +02:00 |
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Åshild J. Vågene
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0f6fb0c10d
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Update mjolnir_globe.md
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2022-06-02 16:00:22 +02:00 |
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Åshild J. Vågene
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e871dc87f9
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Update mjolnir_globe.md
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2022-06-02 15:59:11 +02:00 |
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Åshild J. Vågene
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940077190b
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Update mjolnir_globe.md
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2022-06-02 15:38:40 +02:00 |
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Åshild J. Vågene
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2988e33576
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Create mjolnir_globe.md
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2022-06-02 15:38:07 +02:00 |
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Åshild J. Vågene
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9b9a6f0188
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Update and rename holo_globe to mjolnir_globe
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2022-06-02 15:09:52 +02:00 |
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Åshild J. Vågene
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6d9cc91c5f
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Update holo_globe
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2022-06-02 15:03:47 +02:00 |
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Åshild J. Vågene
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64fe4677b1
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Update holo_globe
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2022-05-31 15:26:23 +02:00 |
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Åshild J. Vågene
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0b51552e88
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Update holo_globe
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2022-05-31 15:23:43 +02:00 |
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Emil Bertilsson
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80e2a50a2f
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Merge pull request #378 from raysloks/feat/hasta_java_memory_fix
Feat/hasta java memory fix
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2022-05-30 14:40:52 +02:00 |
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Emil
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8453f6b41a
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Moves qualimap arg to pipeline-specific config
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2022-05-30 12:58:12 +02:00 |
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Emil
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29fa08c434
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Adds _JAVA_OPTIONS to singularity whitelist
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2022-05-30 11:07:24 +02:00 |
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Emil
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19497a4183
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Makes qualimap fix work for most memory amounts
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2022-05-30 11:06:48 +02:00 |
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Åshild J. Vågene
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bb25c77e7c
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Update holo_globe
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2022-05-20 17:01:30 +02:00 |
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Åshild J. Vågene
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d3e5c79fb4
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Create holo_globe
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2022-05-20 15:44:20 +02:00 |
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Phil Ewels
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123706519e
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Merge pull request #377 from nvnieuwk/vsc_ugent
Typo in VSC UGent markdown
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2022-05-20 10:55:39 +02:00 |
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nvnieuwk
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15e03bcc7b
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Merge branch 'nf-core:master' into vsc_ugent
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2022-05-20 10:36:51 +02:00 |
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Nicolas Vannieuwkerke
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867dcabd97
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Fix type in VSC UGent
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2022-05-20 10:36:07 +02:00 |
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nvnieuwk
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817f1a4aa7
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Merge pull request #376 from nvnieuwk/vsc_ugent
Added the VSC UGent profile
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2022-05-20 10:29:50 +02:00 |
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Nicolas Vannieuwkerke
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8432e4d1dc
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typo
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2022-05-20 09:49:42 +02:00 |
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Nicolas Vannieuwkerke
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fa39478a2d
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prettier
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2022-05-20 09:49:04 +02:00 |
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Nicolas Vannieuwkerke
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c2b26a734d
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automated the internal cache dir location for singularity
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2022-05-20 09:48:19 +02:00 |
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nvnieuwk
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b2f7538b33
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Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-20 09:42:31 +02:00 |
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nvnieuwk
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a3583262c2
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Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-20 09:41:02 +02:00 |
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nvnieuwk
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dba85e53fa
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Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-20 09:40:55 +02:00 |
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Nicolas Vannieuwkerke
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d12fdfb40a
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added to the README
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2022-05-20 09:37:55 +02:00 |
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Nicolas Vannieuwkerke
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6fa8cd8a6d
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added the profile to the test yaml
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2022-05-20 09:33:43 +02:00 |
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Nicolas Vannieuwkerke
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a2d77df2ee
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added default scratch location to markdown file
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2022-05-20 09:32:14 +02:00 |
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Nicolas Vannieuwkerke
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8621db3440
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added the profile to nfcore_custom
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2022-05-20 09:21:46 +02:00 |
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Nicolas Vannieuwkerke
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2f74c91145
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prettier
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2022-05-20 09:18:33 +02:00 |
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Nicolas Vannieuwkerke
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cc86e6b270
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Added the VSC UGent profile
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2022-05-20 09:12:18 +02:00 |
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Sarah Guinchard
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be9711731a
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Merge pull request #375 from nf-core/ifb_core-config-update
Ifb core config update
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2022-05-13 14:45:44 +02:00 |
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Sofia Stamouli
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44402cf28e
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Merge pull request #373 from genomic-medicine-sweden/taxprofiler_hasta
Add hasta config for taxprofiler
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2022-05-12 15:23:26 +02:00 |
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sofstam
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ca4cdcffee
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Fix typo
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2022-05-12 15:07:30 +02:00 |
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sofstam
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b1deb0abce
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Update README.md
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2022-05-12 14:56:52 +02:00 |
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Sarah Guinchard
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3538f8511a
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removed comment
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2022-05-12 11:02:42 +02:00 |
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Sarah Guinchard
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84457cc655
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Update documentation
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2022-05-12 11:01:36 +02:00 |
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sofstam
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54b3cda34d
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Add review suggestion
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2022-05-12 11:00:26 +02:00 |
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Sarah Guinchard
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6bb7c1a422
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Update config file with queue & correct ressources
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2022-05-12 10:55:00 +02:00 |
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sofstam
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c59149d64c
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Update docs for hasta config
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2022-05-12 10:47:03 +02:00 |
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