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Author	SHA1	Message	Date
James Fellows Yates	c40ebb9acf	Add overhead for get_software_versions	2022-06-03 14:21:41 +02:00
James Fellows Yates	df0429ce9d	Replace oracle specific _JAVA_OPTIONS to portable JAVA_TOOLS_OPTIONS	2022-06-03 14:20:39 +02:00
Phil Ewels	b51059a3ae	Merge branch 'master' into config_ucph-mjolnir_ash	2022-06-03 13:21:36 +02:00
James A. Fellows Yates	7353fb257d	Merge pull request #380 from jfy133/taxprofiler ... Add MAG @ EVA profile	2022-06-03 12:54:47 +02:00
James A. Fellows Yates	24e165c52d	Update pipeline/mag.config	2022-06-03 12:51:47 +02:00
James A. Fellows Yates	97d57539e3	Apply suggestions from code review ... Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>	2022-06-03 12:51:20 +02:00
James Fellows Yates	5a67eba04c	Add MAG @ EVA profile	2022-06-03 12:41:08 +02:00
Åshild J. Vågene	1d23ba9264	change name of tmp dir to .tmp_nfcore	2022-06-02 16:40:29 +02:00
Åshild J. Vågene	2b67d3aaab	Update main.yml	2022-06-02 16:30:35 +02:00
Åshild J. Vågene	62dfda8103	add mjolnir_globe md	2022-06-02 16:07:47 +02:00
Åshild J. Vågene	7a63e0a2ec	mjolnir_globe config added	2022-06-02 16:05:28 +02:00
Åshild J. Vågene	0f6fb0c10d	Update mjolnir_globe.md	2022-06-02 16:00:22 +02:00
Åshild J. Vågene	e871dc87f9	Update mjolnir_globe.md	2022-06-02 15:59:11 +02:00
Åshild J. Vågene	940077190b	Update mjolnir_globe.md	2022-06-02 15:38:40 +02:00
Åshild J. Vågene	2988e33576	Create mjolnir_globe.md	2022-06-02 15:38:07 +02:00
Åshild J. Vågene	9b9a6f0188	Update and rename holo_globe to mjolnir_globe	2022-06-02 15:09:52 +02:00
Åshild J. Vågene	6d9cc91c5f	Update holo_globe	2022-06-02 15:03:47 +02:00
Åshild J. Vågene	64fe4677b1	Update holo_globe	2022-05-31 15:26:23 +02:00
Åshild J. Vågene	0b51552e88	Update holo_globe	2022-05-31 15:23:43 +02:00
Emil Bertilsson	80e2a50a2f	Merge pull request #378 from raysloks/feat/hasta_java_memory_fix ... Feat/hasta java memory fix	2022-05-30 14:40:52 +02:00
Emil	8453f6b41a	Moves qualimap arg to pipeline-specific config	2022-05-30 12:58:12 +02:00
Emil	29fa08c434	Adds _JAVA_OPTIONS to singularity whitelist	2022-05-30 11:07:24 +02:00
Emil	19497a4183	Makes qualimap fix work for most memory amounts	2022-05-30 11:06:48 +02:00
Åshild J. Vågene	bb25c77e7c	Update holo_globe	2022-05-20 17:01:30 +02:00
Åshild J. Vågene	d3e5c79fb4	Create holo_globe	2022-05-20 15:44:20 +02:00
Phil Ewels	123706519e	Merge pull request #377 from nvnieuwk/vsc_ugent ... Typo in VSC UGent markdown	2022-05-20 10:55:39 +02:00
nvnieuwk	15e03bcc7b	Merge branch 'nf-core:master' into vsc_ugent	2022-05-20 10:36:51 +02:00
Nicolas Vannieuwkerke	867dcabd97	Fix type in VSC UGent	2022-05-20 10:36:07 +02:00
nvnieuwk	817f1a4aa7	Merge pull request #376 from nvnieuwk/vsc_ugent ... Added the VSC UGent profile	2022-05-20 10:29:50 +02:00
Nicolas Vannieuwkerke	8432e4d1dc	typo	2022-05-20 09:49:42 +02:00
Nicolas Vannieuwkerke	fa39478a2d	prettier	2022-05-20 09:49:04 +02:00
Nicolas Vannieuwkerke	c2b26a734d	automated the internal cache dir location for singularity	2022-05-20 09:48:19 +02:00
nvnieuwk	b2f7538b33	Update docs/vsc_ugent.md ... Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>	2022-05-20 09:42:31 +02:00
nvnieuwk	a3583262c2	Update docs/vsc_ugent.md ... Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>	2022-05-20 09:41:02 +02:00
nvnieuwk	dba85e53fa	Update docs/vsc_ugent.md ... Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>	2022-05-20 09:40:55 +02:00
Nicolas Vannieuwkerke	d12fdfb40a	added to the README	2022-05-20 09:37:55 +02:00
Nicolas Vannieuwkerke	6fa8cd8a6d	added the profile to the test yaml	2022-05-20 09:33:43 +02:00
Nicolas Vannieuwkerke	a2d77df2ee	added default scratch location to markdown file	2022-05-20 09:32:14 +02:00
Nicolas Vannieuwkerke	8621db3440	added the profile to nfcore_custom	2022-05-20 09:21:46 +02:00
Nicolas Vannieuwkerke	2f74c91145	prettier	2022-05-20 09:18:33 +02:00
Nicolas Vannieuwkerke	cc86e6b270	Added the VSC UGent profile	2022-05-20 09:12:18 +02:00
Sarah Guinchard	be9711731a	Merge pull request #375 from nf-core/ifb_core-config-update ... Ifb core config update	2022-05-13 14:45:44 +02:00
Sofia Stamouli	44402cf28e	Merge pull request #373 from genomic-medicine-sweden/taxprofiler_hasta ... Add hasta config for taxprofiler	2022-05-12 15:23:26 +02:00
sofstam	ca4cdcffee	Fix typo	2022-05-12 15:07:30 +02:00
sofstam	b1deb0abce	Update README.md	2022-05-12 14:56:52 +02:00
Sarah Guinchard	3538f8511a	removed comment	2022-05-12 11:02:42 +02:00
Sarah Guinchard	84457cc655	Update documentation	2022-05-12 11:01:36 +02:00
sofstam	54b3cda34d	Add review suggestion	2022-05-12 11:00:26 +02:00
Sarah Guinchard	6bb7c1a422	Update config file with queue & correct ressources	2022-05-12 10:55:00 +02:00
sofstam	c59149d64c	Update docs for hasta config	2022-05-12 10:47:03 +02:00