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Author SHA1 Message Date
Marc Hoeppner
e5b798e21f Updating CCGA med to use the new Beegfs file system 2022-10-04 14:07:44 +02:00
Harshil Patel
4de0855218
Update genomes.config 2021-02-15 18:48:03 +00:00
Harshil Patel
76750ad59b
Merge pull request #205 from drpatelh/primers 
Add ARTIC primer sets to genome config
 2021-02-15 17:16:13 +00:00
drpatelh
9d500cf679 Reorder params 2021-02-15 17:02:26 +00:00
drpatelh
f283dfb2dc Add ARTIC primer sets to genome config 2021-02-15 16:58:30 +00:00
James A. Fellows Yates
86566ddd3b
Merge pull request #204 from jfy133/master 
Add a 'big_data' profile for eager @ SHH
 2021-02-04 15:07:52 +01:00
James A. Fellows Yates
e32f1e46ff
Update shh.config 2021-02-04 08:13:16 +01:00
James A. Fellows Yates
c515a401c7
Update shh.config 2021-02-04 08:06:35 +01:00
James A. Fellows Yates
82fe8a04be
Update shh.config 2021-02-04 08:02:33 +01:00
James A. Fellows Yates
e7ac0bae13
Update shh.config 2021-02-04 08:00:57 +01:00
James A. Fellows Yates
eb725f9ea3
Update shh.config 2021-02-03 20:13:09 +01:00
Alexander Peltzer
95791b04a4
Merge pull request #203 from oist/draftOISTconfig 
Institutional profile for the Okinawa Institute of Science and Technology (OIST)
 2021-02-02 14:07:03 +01:00
Charles Plessy
1608b36dcf Institutional profile for Okinawa Institute of Science and Technology 2021-02-02 17:40:10 +09:00
Thiseas C. Lamnidis
c33cedf4ed
Merge pull request #202 from nf-core/TCLamnidis-patch-1 
Add debug profile
 2021-01-26 15:20:56 +01:00
Thiseas C. Lamnidis
713a032a36
Add debug profile 
which deactivates cleanup of workdir after successful run
 2021-01-26 15:08:21 +01:00
James A. Fellows Yates
5ba1b01c0c
Merge pull request #200 from nf-core/ceh-config 
Seg_globe config
 2021-01-21 13:24:26 +01:00
James A. Fellows Yates
26d164ca74
Remove ceh profile for now 2021-01-21 13:15:08 +01:00
James A. Fellows Yates
c4604450d8
Update seg_globe.md 2021-01-21 13:04:12 +01:00
James A. Fellows Yates
7cffcf809b
Update main.yml 2021-01-21 12:50:14 +01:00
Åshild J. Vågene
765a2e0b7e
Update README.md 2021-01-21 11:55:00 +01:00
Åshild J. Vågene
8037b73ddd
Update nfcore_custom.config 2021-01-21 11:52:58 +01:00
Åshild J. Vågene
bcd137225e
Update and rename ceh.md to seg_globe.md 2021-01-21 11:46:46 +01:00
Åshild J. Vågene
594985f1ee
Update and rename ceh.config to seg_globe.config 2021-01-21 11:43:34 +01:00
Åshild J. Vågene
ef80452577
Update docs/ceh.md 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2021-01-21 11:16:46 +01:00
Åshild J. Vågene
8fa720b9cc
Update conf/ceh.config 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2021-01-21 11:15:06 +01:00
James A. Fellows Yates
2fd475c339
Fix some linting errors 2021-01-21 06:30:43 +01:00
James A. Fellows Yates
964cae4ac7
Add CEH to CI 2021-01-21 06:22:37 +01:00
Åshild J. Vågene
f8973f153a
Update ceh.config 2021-01-21 00:31:49 +01:00
Åshild J. Vågene
d108666950
Update ceh.md 2021-01-21 00:30:54 +01:00
Åshild J. Vågene
91594dffea
Update ceh.config 2021-01-21 00:29:43 +01:00
Åshild J. Vågene
22e6a60db1
Update README.md 2021-01-21 00:22:13 +01:00
Åshild J. Vågene
a6f316b58b
Update README.md 2021-01-21 00:21:13 +01:00
Åshild J. Vågene
65831b73ef
Create ceh.md 2021-01-21 00:17:08 +01:00
Åshild J. Vågene
8a8f95e364
Update nfcore_custom.config 2021-01-20 23:47:58 +01:00
Åshild J. Vågene
c11c26f15f
Create ceh.config 2021-01-20 23:45:26 +01:00
James A. Fellows Yates
1c25cb033b
Add big_data profile 2021-01-19 13:53:01 +01:00
Patrick Hüther
b63a8b0554
Merge pull request #199 from rbpisupati/cbe-conda 
cbe: add conda module as fallback
 2021-01-15 13:06:48 +01:00
rbpisupati
9b5ac5c89d added anaconda module for cbe 2021-01-15 12:55:46 +01:00
James A. Fellows Yates
a4c55b3ea9
Fix time limit 0-9 typo 2021-01-06 10:44:12 +01:00
Combiz Khozoie
ea2fd4be94
Merge pull request #197 from combiz/imperial 
Added institutional configs for Imperial and Imperial MEDBIO.  Added …
 2020-12-18 16:33:17 +00:00
Combiz Khozoie
17cf4e3b35 fixed indents 2020-12-18 15:34:56 +00:00
Combiz Khozoie
3824403b4e removed workDir from Imperial configs 2020-12-18 10:31:36 +00:00
Combiz Khozoie
4bb52358f5 updated Github Actions YML 2020-12-18 10:27:40 +00:00
Combiz Khozoie
a61992d144 Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO 2020-12-18 10:21:26 +00:00
Alexander Peltzer
65e2ff56d8
Merge pull request #195 from marcel-keller/patch-1 
change of directory for conda environments
 2020-12-09 14:35:00 +01:00
marcel-keller
c9ceaff3b3
change of directory for conda environments 
change of directory due to recent changes in our infrastructure
 2020-12-09 15:11:21 +02:00
Maxime Garcia
2fb205264e
Merge pull request #192 from arontommi/dev 
Documentation for Bianca
 2020-12-09 11:09:23 +01:00
emnilsson
8cc2fc5ecb
Merge pull request #193 from emnilsson/master 
Modified ampliseq-specific uppmax-config
 2020-12-02 13:40:43 +01:00
Alexander Peltzer
99985c658f
Merge pull request #194 from marcel-keller/ebc 
Update ebc.config
 2020-11-26 14:12:33 +01:00
marcel-keller
5590a9743a
Update ebc.config 
queueSize to 64
 2020-11-26 15:05:25 +02:00