millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-24 00:59:55 +00:00
Code Issues Releases Packages Activity
813 commits 4 branches 0 tags 1.9 MiB
Commit graph

813 commits

This branch
This branch
All branches
Author SHA1 Message Date
Marc Hoeppner
e5b798e21f Updating CCGA med to use the new Beegfs file system 2022-10-04 14:07:44 +02:00
Harshil Patel
4de0855218
Update genomes.config 2021-02-15 18:48:03 +00:00
Harshil Patel
76750ad59b
Merge pull request #205 from drpatelh/primers 
Add ARTIC primer sets to genome config
 2021-02-15 17:16:13 +00:00
drpatelh
9d500cf679 Reorder params 2021-02-15 17:02:26 +00:00
drpatelh
f283dfb2dc Add ARTIC primer sets to genome config 2021-02-15 16:58:30 +00:00
James A. Fellows Yates
86566ddd3b
Merge pull request #204 from jfy133/master 
Add a 'big_data' profile for eager @ SHH
 2021-02-04 15:07:52 +01:00
James A. Fellows Yates
e32f1e46ff
Update shh.config 2021-02-04 08:13:16 +01:00
James A. Fellows Yates
c515a401c7
Update shh.config 2021-02-04 08:06:35 +01:00
James A. Fellows Yates
82fe8a04be
Update shh.config 2021-02-04 08:02:33 +01:00
James A. Fellows Yates
e7ac0bae13
Update shh.config 2021-02-04 08:00:57 +01:00
James A. Fellows Yates
eb725f9ea3
Update shh.config 2021-02-03 20:13:09 +01:00
Alexander Peltzer
95791b04a4
Merge pull request #203 from oist/draftOISTconfig 
Institutional profile for the Okinawa Institute of Science and Technology (OIST)
 2021-02-02 14:07:03 +01:00
Charles Plessy
1608b36dcf Institutional profile for Okinawa Institute of Science and Technology 2021-02-02 17:40:10 +09:00
Thiseas C. Lamnidis
c33cedf4ed
Merge pull request #202 from nf-core/TCLamnidis-patch-1 
Add debug profile
 2021-01-26 15:20:56 +01:00
Thiseas C. Lamnidis
713a032a36
Add debug profile 
which deactivates cleanup of workdir after successful run
 2021-01-26 15:08:21 +01:00
James A. Fellows Yates
5ba1b01c0c
Merge pull request #200 from nf-core/ceh-config 
Seg_globe config
 2021-01-21 13:24:26 +01:00
James A. Fellows Yates
26d164ca74
Remove ceh profile for now 2021-01-21 13:15:08 +01:00
James A. Fellows Yates
c4604450d8
Update seg_globe.md 2021-01-21 13:04:12 +01:00
James A. Fellows Yates
7cffcf809b
Update main.yml 2021-01-21 12:50:14 +01:00
Åshild J. Vågene
765a2e0b7e
Update README.md 2021-01-21 11:55:00 +01:00
Åshild J. Vågene
8037b73ddd
Update nfcore_custom.config 2021-01-21 11:52:58 +01:00
Åshild J. Vågene
bcd137225e
Update and rename ceh.md to seg_globe.md 2021-01-21 11:46:46 +01:00
Åshild J. Vågene
594985f1ee
Update and rename ceh.config to seg_globe.config 2021-01-21 11:43:34 +01:00
Åshild J. Vågene
ef80452577
Update docs/ceh.md 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2021-01-21 11:16:46 +01:00
Åshild J. Vågene
8fa720b9cc
Update conf/ceh.config 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2021-01-21 11:15:06 +01:00
James A. Fellows Yates
2fd475c339
Fix some linting errors 2021-01-21 06:30:43 +01:00
James A. Fellows Yates
964cae4ac7
Add CEH to CI 2021-01-21 06:22:37 +01:00
Åshild J. Vågene
f8973f153a
Update ceh.config 2021-01-21 00:31:49 +01:00
Åshild J. Vågene
d108666950
Update ceh.md 2021-01-21 00:30:54 +01:00
Åshild J. Vågene
91594dffea
Update ceh.config 2021-01-21 00:29:43 +01:00
Åshild J. Vågene
22e6a60db1
Update README.md 2021-01-21 00:22:13 +01:00
Åshild J. Vågene
a6f316b58b
Update README.md 2021-01-21 00:21:13 +01:00
Åshild J. Vågene
65831b73ef
Create ceh.md 2021-01-21 00:17:08 +01:00
Åshild J. Vågene
8a8f95e364
Update nfcore_custom.config 2021-01-20 23:47:58 +01:00
Åshild J. Vågene
c11c26f15f
Create ceh.config 2021-01-20 23:45:26 +01:00
James A. Fellows Yates
1c25cb033b
Add big_data profile 2021-01-19 13:53:01 +01:00
Patrick Hüther
b63a8b0554
Merge pull request #199 from rbpisupati/cbe-conda 
cbe: add conda module as fallback
 2021-01-15 13:06:48 +01:00
rbpisupati
9b5ac5c89d added anaconda module for cbe 2021-01-15 12:55:46 +01:00
James A. Fellows Yates
a4c55b3ea9
Fix time limit 0-9 typo 2021-01-06 10:44:12 +01:00
Combiz Khozoie
ea2fd4be94
Merge pull request #197 from combiz/imperial 
Added institutional configs for Imperial and Imperial MEDBIO.  Added …
 2020-12-18 16:33:17 +00:00
Combiz Khozoie
17cf4e3b35 fixed indents 2020-12-18 15:34:56 +00:00
Combiz Khozoie
3824403b4e removed workDir from Imperial configs 2020-12-18 10:31:36 +00:00
Combiz Khozoie
4bb52358f5 updated Github Actions YML 2020-12-18 10:27:40 +00:00
Combiz Khozoie
a61992d144 Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO 2020-12-18 10:21:26 +00:00
Alexander Peltzer
65e2ff56d8
Merge pull request #195 from marcel-keller/patch-1 
change of directory for conda environments
 2020-12-09 14:35:00 +01:00
marcel-keller
c9ceaff3b3
change of directory for conda environments 
change of directory due to recent changes in our infrastructure
 2020-12-09 15:11:21 +02:00
Maxime Garcia
2fb205264e
Merge pull request #192 from arontommi/dev 
Documentation for Bianca
 2020-12-09 11:09:23 +01:00
emnilsson
8cc2fc5ecb
Merge pull request #193 from emnilsson/master 
Modified ampliseq-specific uppmax-config
 2020-12-02 13:40:43 +01:00
Alexander Peltzer
99985c658f
Merge pull request #194 from marcel-keller/ebc 
Update ebc.config
 2020-11-26 14:12:33 +01:00
marcel-keller
5590a9743a
Update ebc.config 
queueSize to 64
 2020-11-26 15:05:25 +02:00