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Author	SHA1	Message	Date
ameynert	e5f2a63079	Java overhead processes list updated ... Added all processes calling GATK for Mutect2 variant calling	2021-03-30 16:21:53 +01:00
ameynert	adfb5366b9	Java overhead process list updated ... Added HaplotypeCaller and GenotypeGVCFs to set of processes that need Java overhead	2021-03-30 16:15:17 +01:00
ameynert	700776f759	Change to shared Singularity cache	2021-03-30 16:11:15 +01:00
ameynert	25716fe849	Merge pull request #2 from nf-core/master ... Merge commits from nf-core/configs master	2021-03-30 16:09:32 +01:00
Gisela Gabernet	71a97ba316	Merge pull request #185 from ggabernet/master ... awsbatch config update	2021-03-28 20:59:40 +02:00
Alexander Peltzer	26b5904df1	Merge pull request #218 from asafpr/master ... added jax singularity cache dir	2021-03-24 17:39:03 +01:00
Asaf Peer	922ab87eb0	added jax singularity cache dir	2021-03-24 11:25:47 -04:00
ameynert	6215414ecf	Merge pull request #217 from ameynert/master ... Addition of eddie institutional profile	2021-03-24 14:05:07 +00:00
ameynert	3a8e54f153	Removed sneaky trailing whitespace.	2021-03-24 13:58:10 +00:00
ameynert	a0d42f5153	Fixed code blocks for markdown linting	2021-03-24 13:55:31 +00:00
ameynert	2d90c919aa	Added eddie profile to github workflow tests	2021-03-24 13:51:37 +00:00
Phil Ewels	8e6223d1bd	Update nfcore_custom.config	2021-03-24 12:36:50 +01:00
Phil Ewels	bfab371c94	Merge branch 'master' into master	2021-03-24 12:36:15 +01:00
Phil Ewels	158402eddf	Update nfcore_custom.config	2021-03-24 12:26:49 +01:00
ameynert	aeb0ffcfde	Spacing fix ... Co-authored-by: Maxime Garcia <maxime.garcia@scilifelab.se>	2021-03-24 11:26:09 +00:00
ameynert	2a8ae2b214	Update eddie.md	2021-03-24 11:12:41 +00:00
ameynert	96fe6185a0	IGMM-specific docs	2021-03-24 11:01:41 +00:00
ameyner2	00d984d918	Merge branch 'master' of github.com:ameynert/configs	2021-03-24 10:46:43 +00:00
ameyner2	da8cf2f207	Added pipeline-specific config files for rnaseq and sarek	2021-03-24 10:46:26 +00:00
Asaf Peer	9b2d5bfead	Merge pull request #216 from asafpr/master ... Added JAX conf	2021-03-24 03:31:14 -04:00
ameynert	791f3c95f3	Pipeline specific configs moving to confs/pipeline	2021-03-23 16:07:07 +00:00
Alexander Peltzer	5988c51361	Merge pull request #211 from DoaneAS/master ... Adding WCM.config for Weill Cornell Medicine cluster	2021-03-23 14:58:27 +01:00
Phil Ewels	a9aae577ef	Merge pull request #215 from Emiller88/ganymede-update	2021-03-22 19:18:02 +01:00
Edmund Miller	a6975cdd4e	fix(ganymede): large => high ... Co-authored-by: drpatelh <drpatelh@users.noreply.github.com>	2021-03-22 12:42:56 -05:00
Edmund Miller	34ccce9531	fix(ganymede): Add process resources ... Trimgalore though it can be a bottom neck, doesn't require the 1 big memory node we have and can be run on the genomics queue.	2021-03-21 21:47:59 -05:00
Edmund Miller	4570718b12	fix(ganymede): Add TMPDIR and SINGULARITY_CACHEDIR env variables	2021-03-21 21:45:39 -05:00
Asaf Peer	30c864e112	added JAX conf	2021-03-21 06:49:11 -04:00
Asaf Peer	93bde78faa	added JAX conf	2021-03-21 06:47:52 -04:00
ameynert	b48136a62e	Added pipeline-specific config files	2021-03-18 12:55:03 +00:00
ameynert	af6a6b1060	Details on running on eddie ... Removed Conda support, Singularity by default. Added login and screen session on wild west node options.	2021-03-18 12:48:48 +00:00
ameyner2	bb388fb88b	Merge branch 'master' of github.com:ameynert/configs	2021-03-18 12:32:11 +00:00
ameyner2	059d353a1e	Removed Conda, added automount Singularity	2021-03-18 12:31:56 +00:00
ameynert	4ad6bb2bec	Singularity info	2021-03-17 14:50:40 +00:00
Harshil Patel	2ce1e2a9cc	Create rnaseq.config	2021-03-17 12:32:47 +00:00
ameyner2	d4cd07c646	Typo in beforescript	2021-03-17 09:21:26 +00:00
Maxime Garcia	ec11a9a951	Merge pull request #212 from noirot/master ... Add IFB config	2021-03-16 16:55:38 +01:00
Noirot Céline	e3216ccf79	typo	2021-03-16 16:00:56 +01:00
Noirot Céline	cc17045914	Add institution	2021-03-16 15:58:29 +01:00
Noirot Céline	7e9f83ee81	Add IFB config	2021-03-16 15:54:19 +01:00
ameyner2	cfe13fe6c1	Fixed typo & added singularity tmpdir	2021-03-15 15:42:30 +00:00
Ashley S Doane	6343a7f87c	Update wcm.md	2021-03-11 14:01:07 -05:00
Ashley S Doane	d630bcfb6c	Create wcm.md	2021-03-11 13:59:55 -05:00
Ashley S Doane	e7f8189dfc	Create wcm.config	2021-03-11 13:52:11 -05:00
Patrick Hüther	a64dfd98c2	Merge pull request #209 from phue/cbe_rapid_qos ... cbe: add rapid qos	2021-03-10 21:03:08 +01:00
phue	da3bd2693d	cbe: add rapid qos ... and update config url	2021-03-10 11:26:01 +01:00
ameynert	bc961c7990	Merge pull request #1 from ggrimes/patch-1 ... changed # to // for comments	2021-03-04 19:48:45 +00:00
Graeme Grimes	babeccd020	changed # to // for comments	2021-03-04 16:45:21 +00:00
ameynert	4c0111f598	Eddie profile documentation initial commit	2021-03-04 14:46:58 +00:00
ameynert	6f09a233f0	Added singularity module	2021-03-04 14:46:23 +00:00
ameynert	3af2c6409f	Initial commit of eddie.config	2021-03-03 09:59:16 +00:00