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Author	SHA1	Message	Date
Matiss Ozols	f8b932ae2d	added leicester profile	2021-10-21 18:32:57 +01:00
James A. Fellows Yates	5afa43ad15	Merge pull request #289 from jfy133/eva-fix ... Remove broken 1240k profile for eager@EVA	2021-10-18 11:03:39 +02:00
James A. Fellows Yates	ffdb0a937f	Take previous working one I think	2021-10-18 10:58:06 +02:00
James A. Fellows Yates	b269a577e6	Revert 1240k	2021-10-18 10:52:28 +02:00
James A. Fellows Yates	7f94989b39	Merge pull request #288 from nf-core/TCLamnidis-patch-1 ... added 1240k profile	2021-10-18 08:45:19 +02:00
Thiseas C. Lamnidis	e741ecb7a7	Update eva.config	2021-10-13 13:04:41 +02:00
Thiseas C. Lamnidis	92648c1c1f	added 1240k profile	2021-10-12 15:12:49 +02:00
Mahesh Binzer-Panchal	8d68d76a44	Merge pull request #287 from mahesh-panchal/add_snic_tmp ... Add SNIC_TMP to config	2021-10-11 10:38:50 +02:00
Mahesh Binzer-Panchal	ac815ce790	Merge branch 'master' into add_snic_tmp	2021-10-11 09:57:49 +02:00
Pontus Freyhult	33ae41bc91	Merge pull request #226 from pontus/master ... UPPMAX: Allow jobs needing more memory than thin nodes, pick up cluster info through slurm	2021-10-10 12:05:07 +02:00
James A. Fellows Yates	73b6b74c69	Merge pull request #279 from pierrespc/master ... Added Configuration files for running in Maestro HPC at Pasteur Institute, Paris	2021-10-08 19:15:47 +02:00
James A. Fellows Yates	98bbc2b744	Linting	2021-10-08 14:11:39 +02:00
James A. Fellows Yates	b26e495e19	Apply suggestions from code review	2021-10-08 14:08:51 +02:00
pierrespc	2d102eafbc	format docs	2021-10-08 13:46:47 +02:00
Mahesh Binzer-Panchal	747a89b4c5	Update conf/uppmax.config	2021-10-08 13:40:59 +02:00
pierrespc	035ab61f61	added unlimitedtime profile to maestro; changed cache for bwa process	2021-10-08 09:05:46 +02:00
Mahesh Binzer-Panchal	e557e94bfb	Add SNIC_TMP to config	2021-10-07 16:05:03 +02:00
FriederikeHanssen	4f8b0d6478	Merge pull request #286 from FriederikeHanssen/cfc ... Update sarek - cfc specific config	2021-10-05 10:50:08 +02:00
FriederikeHanssen	f1756ba121	Merge branch 'nf-core:master' into cfc	2021-10-04 18:04:18 +02:00
pierrespc	1621585558	improving documentation	2021-10-04 16:08:33 +02:00
pierrespc	e5d4a357c5	clean doc	2021-10-04 15:08:01 +02:00
Falko Hofmann	0950eb3518	Merge pull request #251 from phue/cbe_singularity_workaround ... cbe: send SIGUSR2 upon job termination	2021-10-04 13:24:53 +02:00
Rike	f6e16f2872	Add check_resource to respect max_resource/max_cpus	2021-10-04 10:14:02 +02:00
pierrespc	136fd44e0c	corrected docs/maestro.config	2021-09-29 13:50:56 +02:00
pierrespc	f6266879d6	edited maestronuclear and maestromitocondrial configs. The latter has not been optimized yet	2021-09-29 13:47:35 +02:00
pierrespc	b71df6fe57	renamed eager pipeline config file	2021-09-29 13:22:07 +02:00
pierrespc	9ea3e2096a	long and normal qos profiles defined now in an unique maestro config file. maestro.config also defined in pipeline/eager for ressources assignation to specific processes	2021-09-29 13:11:14 +02:00
James A. Fellows Yates	8e554cd43c	Merge pull request #285 from bbartholdy/master ... Add ALICE cluster to profiles	2021-09-28 13:57:16 +02:00
Bjørn Peare Bartholdy	e750a6d445	Update conf/alice.config ... Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>	2021-09-28 13:34:12 +02:00
James A. Fellows Yates	e8b48416bc	Update docs/alice.md	2021-09-28 12:52:31 +02:00
Bjørn Peare Bartholdy	ad83430632	Update docs/alice.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2021-09-28 12:43:54 +02:00
Bjørn Peare Bartholdy	197bd6cfb1	Merge branch 'nf-core:master' into master	2021-09-28 12:09:50 +02:00
bbartholdy	b6ccb46383	add ALICE profile	2021-09-28 12:08:27 +02:00
Alexander Peltzer	09418b5da9	Merge pull request #284 from projectoriented/hasta ... Add Hasta config	2021-09-28 11:20:16 +02:00
Mei Wu	79a79f7d8d	added pipeline-specific config	2021-09-28 10:38:25 +02:00
Mei Wu	735100ed0b	updated readme	2021-09-27 16:37:34 +02:00
Mei Wu	c2d74b290a	fix md	2021-09-27 16:25:02 +02:00
Mei Wu	a8a2027f70	Merge branch 'master' into hasta	2021-09-27 16:12:23 +02:00
Mei Wu	d3b92bad9d	fix lint	2021-09-27 16:11:18 +02:00
Mei Wu	06fac1dcfc	initial commit	2021-09-27 16:05:32 +02:00
Mei Wu	ae0adb056f	initial commit	2021-09-27 16:05:19 +02:00
Alexander Peltzer	acada75ffe	Merge pull request #282 from aunderwo/master ... Add longer time for long queue	2021-09-23 16:17:17 +02:00
Anthony Underwood	3701137740	Merge branch 'nf-core:master' into master	2021-09-23 12:03:38 +01:00
Anthony Underwood	6a970dc4a8	update max time for long queue	2021-09-23 11:59:45 +01:00
Patrick Hüther	1cbe2759c4	fix invalid rapid qos selection ... it only applies to the c partition	2021-09-22 11:54:27 +02:00
pierrespc	3e22b85b02	maestro only for normal qos	2021-09-22 10:13:46 +02:00
Harshil Patel	f4c240790a	Merge pull request #281 from aunderwo/master ... update sanger profile so that long jobs to be submitted to the long queue	2021-09-21 20:47:58 +01:00
Anthony Underwood	50df2105fb	update long jobs to be submitted to the long queue	2021-09-21 14:42:59 +01:00
pierrespc	3b593d46ec	merged two pasteur config files for maestro	2021-09-20 15:14:50 +02:00
Harshil Patel	5068e4806f	Merge pull request #271 from theoportlock/master ... Adds Rosalind config for KCL!	2021-09-17 13:36:19 +01:00