millironx/nf-configs
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  • 40eb3e0201
         Update sanger.md Anthony Underwood 2021-04-21 20:20:30 +0100
  • 7163e8723d
         Create sanger.md Anthony Underwood 2021-04-21 20:17:42 +0100
  • 7d8770af1a
         Create sanger.config Anthony Underwood 2021-04-21 16:39:55 +0100
  • 7498e29ec0
         Merge pull request #201 from maxulysse/master_uppmax_offline Maxime Garcia 2021-04-21 13:04:15 +0200
  • 1548690ca6
         Update docs/uppmax.md Maxime Garcia 2021-04-21 12:27:27 +0200
  • fff04ce0ba
         Merge pull request #233 from phue/biohpc_gen Patrick Hüther 2021-04-21 12:14:06 +0200
  • bab9241243 fix: markdownlint MaxUlysse 2021-04-21 11:51:14 +0200
  • 844246cc7d fix: clearer usage of module MaxUlysse 2021-04-21 11:28:58 +0200
  • 1a7ec56c33 feat: more details MaxUlysse 2021-04-21 11:23:50 +0200
  • c89877decc feat: use <PIPLEINE> MaxUlysse 2021-04-21 11:17:06 +0200
  • 658fa7ccda fix: markdownlint MaxUlysse 2021-04-21 11:08:16 +0200
  • 79e3dd65a7
         Apply suggestions from code review Maxime Garcia 2021-04-21 11:06:39 +0200
  • b225a0555a biohpc_gen: update software tree path phue 2021-04-21 10:08:00 +0200
  • 4eea06f0db
         Apply suggestions from code review Maxime Garcia 2021-04-20 16:03:34 +0200
  • 1c1dd952fc fix: bullet list MaxUlysse 2021-04-20 15:58:51 +0200
  • e4d2ef0984
         Apply suggestions from code review Maxime Garcia 2021-04-20 15:53:54 +0200
  • 4930795cab feat: more complete docs MaxUlysse 2021-04-20 15:38:49 +0200
  • eacdf89e53
         Update eva.config James A. Fellows Yates 2021-04-20 13:17:35 +0200
  • 10abca712b fix: first draft of bianca guide MaxUlysse 2021-04-16 17:01:58 +0200
  • a525be112f
         Merge pull request #232 from jfy133/update-mpcdf Alexander Peltzer 2021-04-16 09:28:46 +0200
  • 12a4518803
         Markdown lint fix James A. Fellows Yates 2021-04-15 22:29:15 +0200
  • b9a00f7926
         Update mpcdf.config James A. Fellows Yates 2021-04-15 22:27:07 +0200
  • 0fc90586e0
         Update mpcdf.md James A. Fellows Yates 2021-04-15 22:26:37 +0200
  • c7e4ea25f5
         Update README.md Phil Ewels 2021-04-14 23:30:17 +0200
  • 2f343868ad
         Apply suggestions from code review Phil Ewels 2021-04-13 22:52:31 +0200
  • 7ac66dcd72
         Update crick.config Harshil Patel 2021-04-13 17:07:02 +0100
  • c571c05ab9
         Merge pull request #219 from slacalle/patch-2 Combiz Khozoie 2021-04-13 15:28:00 +0100
  • 3918e0aa9d feat: remove kraken profile MaxUlysse 2021-04-13 15:14:14 +0200
  • 2afb4f0ad6
         Don't recommend setting --custom_config_base manually Phil Ewels 2021-04-13 14:37:54 +0200
  • a0c8a9ec8f updated jax resources Asaf Peer 2021-04-12 16:00:34 -0400
  • ff20f121f9 Support use of very fat node in snowy Pontus Freyhult 2021-04-12 19:34:28 +0200
  • 0987cbe1be Better test for snowy Pontus Freyhult 2021-04-12 19:32:21 +0200
  • 7be4279718 Handle different (unexpected) sinfo returns in different cases Pontus Freyhult 2021-04-12 19:31:41 +0200
  • 57c26c13d9 Redo cases for simplification Pontus Freyhult 2021-04-12 19:21:58 +0200
  • 2f77d16b70
         Merge pull request #220 from ewels/master Phil Ewels 2021-04-08 15:06:00 +0200
  • be6ea0060f Wrap sinfo call in a try/catch and default to rackham on failure Pontus Freyhult 2021-04-08 09:49:42 +0200
  • fa1b4cb412 Move cluster options creating closure out of process scope Pontus Freyhult 2021-04-08 09:45:29 +0200
  • 095cd483e6
         Update README.md James A. Fellows Yates 2021-04-07 20:43:31 +0200
  • 033f81734a
         Make a bit more explicitly exactly what you have to add/update James A. Fellows Yates 2021-04-07 20:32:44 +0200
  • beae329b29
         Add docs as to what exactly you have to do when adding new config James A. Fellows Yates 2021-04-07 20:24:55 +0200
  • a2a47fdecc
         Merge pull request #224 from jfy133/eva James A. Fellows Yates 2021-04-07 19:56:00 +0200
  • 161c3a33d4
         Merge branch 'master' into eva James A. Fellows Yates 2021-04-07 19:28:16 +0200
  • ce465cca57
         Apply suggestions from code review James A. Fellows Yates 2021-04-07 19:27:24 +0200
  • 4d64db85eb Determine cluster through slurm Pontus Freyhult 2021-04-07 18:42:33 +0200
  • c5070f3eba Use node queue when more memory than thin nodes have Pontus Freyhult 2021-04-07 17:07:49 +0200
  • 91f50aad4e
         Merge pull request #221 from phue/biohpc_gen Alexander Peltzer 2021-04-07 14:03:22 +0200
  • 53b54ba845
         Remove whitespace Patrick Hüther 2021-04-07 13:18:06 +0200
  • efa051b3e4
         Merge pull request #222 from ameynert/master ameynert 2021-04-07 09:48:29 +0100
  • 0ab9edde72
         Delete conf/pipeline/atacseq directory ameynert 2021-04-07 09:24:30 +0100
  • 8dac4ca552 Merge branch 'eva' of github.com:jfy133/configs into eva James Fellows Yates 2021-04-06 17:53:32 +0200
  • 60c66d93ac Markdown linting James Fellows Yates 2021-04-06 17:53:27 +0200
  • 832edaa450
         Merge branch 'master' into eva James A. Fellows Yates 2021-04-06 17:51:46 +0200
  • 504c10d6ff
         Update README.md James A. Fellows Yates 2021-04-06 17:50:25 +0200
  • be1d35840d Add EVA and EAGER@EVA James Fellows Yates 2021-04-06 17:48:16 +0200
  • d69af0f287 Merging James Fellows Yates 2021-04-06 16:42:22 +0200
  • 60ae267e43 use SLURM_CLUSTERS env var phue 2021-04-06 11:35:01 +0200
  • 6e201a71f4
         ATAC-seq pipeline config ameynert 2021-03-30 16:31:00 +0100
  • e5f2a63079
         Java overhead processes list updated ameynert 2021-03-30 16:21:53 +0100
  • adfb5366b9
         Java overhead process list updated ameynert 2021-03-30 16:15:17 +0100
  • 700776f759
         Change to shared Singularity cache ameynert 2021-03-30 16:11:15 +0100
  • 25716fe849
         Merge pull request #2 from nf-core/master ameynert 2021-03-30 16:09:32 +0100
  • 7c5a0871a3 add note about required nextflow version phue 2021-03-29 19:36:49 +0200
  • 8fc60e2e70 add config for biohpc_gen phue 2021-03-29 19:25:58 +0200
  • 71a97ba316
         Merge pull request #185 from ggabernet/master Gisela Gabernet 2021-03-28 20:59:40 +0200
  • d34bc40841 UPPMAX: add to schema_ignore_params Phil Ewels 2021-03-26 15:22:57 +0100
  • eccc9ea8d5 Define params.project and params.clusterOptions in uppmax config Phil Ewels 2021-03-26 15:20:32 +0100
  • e2c583d558
         Remove "/rdsgpfs" Santiago Lacalle 2021-03-25 12:38:15 +0000
  • 26b5904df1
         Merge pull request #218 from asafpr/master Alexander Peltzer 2021-03-24 17:39:03 +0100
  • 922ab87eb0 added jax singularity cache dir Asaf Peer 2021-03-24 11:25:47 -0400
  • 6215414ecf
         Merge pull request #217 from ameynert/master ameynert 2021-03-24 14:05:07 +0000
  • 3a8e54f153
         Removed sneaky trailing whitespace. ameynert 2021-03-24 13:58:10 +0000
  • a0d42f5153
         Fixed code blocks for markdown linting ameynert 2021-03-24 13:55:31 +0000
  • 2d90c919aa
         Added eddie profile to github workflow tests ameynert 2021-03-24 13:51:37 +0000
  • 8e6223d1bd
         Update nfcore_custom.config Phil Ewels 2021-03-24 12:36:50 +0100
  • bfab371c94
         Merge branch 'master' into master Phil Ewels 2021-03-24 12:36:15 +0100
  • 158402eddf
         Update nfcore_custom.config Phil Ewels 2021-03-24 12:26:49 +0100
  • aeb0ffcfde
         Spacing fix ameynert 2021-03-24 11:26:09 +0000
  • 2a8ae2b214
         Update eddie.md ameynert 2021-03-24 11:12:41 +0000
  • 96fe6185a0
         IGMM-specific docs ameynert 2021-03-24 11:01:41 +0000
  • 00d984d918 Merge branch 'master' of github.com:ameynert/configs ameyner2 2021-03-24 10:46:43 +0000
  • da8cf2f207 Added pipeline-specific config files for rnaseq and sarek ameyner2 2021-03-24 10:46:26 +0000
  • 9b2d5bfead
         Merge pull request #216 from asafpr/master Asaf Peer 2021-03-24 03:31:14 -0400
  • 791f3c95f3
         Pipeline specific configs moving to confs/pipeline ameynert 2021-03-23 16:07:07 +0000
  • 5988c51361
         Merge pull request #211 from DoaneAS/master Alexander Peltzer 2021-03-23 14:58:27 +0100
  • a9aae577ef
         Merge pull request #215 from Emiller88/ganymede-update Phil Ewels 2021-03-22 19:18:02 +0100
  • a6975cdd4e
         fix(ganymede): large => high Edmund Miller 2021-03-22 12:42:56 -0500
  • 34ccce9531
         fix(ganymede): Add process resources Edmund Miller 2021-03-21 21:46:25 -0500
  • 4570718b12
         fix(ganymede): Add TMPDIR and SINGULARITY_CACHEDIR env variables Edmund Miller 2021-03-21 21:45:39 -0500
  • 30c864e112 added JAX conf Asaf Peer 2021-03-21 06:49:11 -0400
  • 93bde78faa added JAX conf Asaf Peer 2021-03-21 06:47:52 -0400
  • b48136a62e
         Added pipeline-specific config files ameynert 2021-03-18 12:55:03 +0000
  • af6a6b1060
         Details on running on eddie ameynert 2021-03-18 12:48:48 +0000
  • bb388fb88b Merge branch 'master' of github.com:ameynert/configs ameyner2 2021-03-18 12:32:11 +0000
  • 059d353a1e Removed Conda, added automount Singularity ameyner2 2021-03-18 12:31:56 +0000
  • 6221b67bcf Give Strelka a complete compute node Rike 2021-03-18 11:11:02 +0100
  • b1846af9d3 reduce mapping resource further to compute node Rike 2021-03-18 11:10:00 +0100
  • 67c93a4743
         Update conf/pipeline/sarek/cfc.config FriederikeHanssen 2021-03-18 11:06:38 +0100
  • 4ad6bb2bec
         Singularity info ameynert 2021-03-17 14:50:40 +0000
  • b70097e495 remove new line Rike 2021-03-17 15:46:18 +0100
  • 2ce1e2a9cc
         Create rnaseq.config Harshil Patel 2021-03-17 12:32:47 +0000