millironx/nf-configs
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  • 37e7cfae2c Removed unnecessary code that was used to troubleshoot Emelie Nilsso 2020-11-24 07:14:23 +0100
  • cd59bba83e Merge branch 'master' of https://github.com/nf-core/configs Emelie Nilsso 2020-11-24 07:10:05 +0100
  • c47088cda2 Merge remote-tracking branch 'origin' Emelie Nilsso 2020-11-23 21:34:08 +0100
  • 2ea06ffab8 Modified uppmax and ampliseq specific config to fit with the divided preparation of the database Emelie Nilsso 2020-11-23 21:20:36 +0100
  • f3c7b36e3d
         Merge pull request #189 from nf-core/TCLamnidis-patch-1 James A. Fellows Yates 2020-11-18 13:16:54 +0100
  • 71d1ff2226
         Add params block to sdag queue Thiseas C. Lamnidis 2020-11-18 13:04:46 +0100
  • da781907f2
         Move sdag queue specification block in sdag profile Thiseas C. Lamnidis 2020-11-17 19:45:06 +0100
  • be9cb33ac1
         Merge pull request #188 from andrewfrank/patch-1 Harshil Patel 2020-11-12 17:12:41 +0000
  • d70fc2605a
         Fix parameters in google.md Andrew Frank 2020-11-12 11:52:58 -0500
  • 4dfacc1894
         Merge pull request #13 from nf-core/master James A. Fellows Yates 2020-11-10 16:34:16 +0100
  • c95fd9d52f
         Merge pull request #186 from jfy133/shh-singularity-runoptions Maxime Borry 2020-11-10 15:39:40 +0100
  • 9d4d682867
         Update shh.config James A. Fellows Yates 2020-11-10 15:14:03 +0100
  • 885f0ce5f6 awsbatch config update Gisela Gabernet Garriga 2020-11-09 22:41:38 +0100
  • 3cc3445549
         Merge pull request #183 from abims-sbr/abims Maxime Garcia 2020-10-23 09:57:20 +0200
  • e3d733d87e Add ABiMS - fix lint lecorguille 2020-10-23 09:29:54 +0200
  • 4d03f72c78 Add ABiMS - last bits of doc lecorguille 2020-10-23 09:27:12 +0200
  • 6ee6b7bf56 Add ABiMS - remove a useless link lecorguille 2020-10-22 23:36:33 +0200
  • c974972585 Add ABiMS - side files lecorguille 2020-10-22 23:23:56 +0200
  • 23ba1c58b1 Add ABiMS - NXF_SINGULARITY_CACHEDIR lecorguille 2020-10-22 23:17:55 +0200
  • 90d1f9072b Add ABiMS - autoMounts = false lecorguille 2020-10-22 18:18:55 +0200
  • f21d16b24f Add ABiMS - fix lint lecorguille 2020-10-22 17:47:25 +0200
  • a63ca751ee Add ABiMS lecorguille 2020-10-22 16:57:41 +0200
  • 804f53c58c
         Merge pull request #178 from jfy133/master James A. Fellows Yates 2020-10-22 13:34:11 +0200
  • 7088ed196f
         Update mpcdf.md James A. Fellows Yates 2020-10-22 11:08:29 +0200
  • 3995057d7f
         Update mpcdf.config James A. Fellows Yates 2020-10-22 10:42:46 +0200
  • 0d6e269322
         Update mpcdf.md James A. Fellows Yates 2020-10-15 14:24:08 +0200
  • 05deeca2d6
         Update mpcdf.config James A. Fellows Yates 2020-10-15 14:22:35 +0200
  • b0a06096ca
         remove czbiohub_aws from configs olgabot-patch-2 Olga Botvinnik 2020-10-01 06:25:50 -0700
  • 08ad61ee9a
         Remove czbiohub_aws for github actions Olga Botvinnik 2020-09-30 11:32:32 -0700
  • 561dd6b8bb
         Delete czbiohub_aws.config Olga Botvinnik 2020-09-30 11:30:02 -0700
  • 9202ac7e01
         Update main.yml Olga Botvinnik 2020-09-29 16:22:09 -0700
  • b1bd038a11
         Update conf/czbiohub_local.config Olga Botvinnik 2020-09-29 16:20:16 -0700
  • 922638be0a
         Update nfcore_custom.config Olga Botvinnik 2020-09-29 16:17:31 -0700
  • 2c290d5171
         Create czbiohub_local.config Olga Botvinnik 2020-09-29 16:16:41 -0700
  • 2c2d23ac26
         Merge pull request #181 from nf-core/shh-patch James A. Fellows Yates 2020-09-29 14:24:12 +0200
  • e26c22b2f1
         Update shh.config James A. Fellows Yates 2020-09-29 14:03:35 +0200
  • 59cd8d69ed
         Merge pull request #180 from MaxUlysse/rackham Johannes Alneberg 2020-09-29 10:31:04 +0200
  • 2ccbdd3367 update params to latest version MaxUlysse 2020-09-28 13:59:42 +0200
  • 8c0cc4b9ec code polishing MaxUlysse 2020-09-25 09:57:50 +0200
  • 81f910cc95 add specific BamQC config MaxUlysse 2020-09-25 09:49:43 +0200
  • fbe7bd133a update uppmax specific sarek config MaxUlysse 2020-09-25 08:33:53 +0200
  • 11f1fb71db
         Update mpcdf.config James A. Fellows Yates 2020-09-16 10:21:58 +0200
  • bbbdd3cb0f
         Update mpcdf.config James A. Fellows Yates 2020-09-16 10:21:42 +0200
  • 5b3492d240
         Update mpcdf.config James A. Fellows Yates 2020-09-16 10:21:26 +0200
  • 3115963b3e
         Update mpcdf.config James A. Fellows Yates 2020-09-15 19:53:27 +0200
  • c6f7573d01
         Update mpcdf.config James A. Fellows Yates 2020-09-15 17:48:54 +0200
  • bf87ec24e7
         Update mpcdf.config James A. Fellows Yates 2020-09-15 17:45:38 +0200
  • 87c757dc47
         Merge pull request #179 from Emiller88/utd Edmund Miller 2020-09-14 10:28:43 -0500
  • 2c06019d89
         fix(utd): Add check for less than 12 cpu Edmund Miller 2020-09-13 20:45:34 -0500
  • dc2735207e
         feat(utd): add Kim queue Edmund Miller 2020-09-13 20:26:45 -0500
  • 3b7902d11b
         Mad multi-core increase CPUs on retry James A. Fellows Yates 2020-09-06 08:23:35 +0200
  • 4335e5deb7
         Update mpcdf.config James A. Fellows Yates 2020-09-04 20:17:09 +0200
  • af8d25ed09
         Update main.yml James A. Fellows Yates 2020-09-04 20:14:35 +0200
  • 4f991d2c0c
         Update eager.config James A. Fellows Yates 2020-09-04 19:59:27 +0200
  • b4e275c3b9
         Add MPCDF for EAGER James A. Fellows Yates 2020-09-04 19:57:25 +0200
  • 5c7ab234b6
         Create mpcdf.config James A. Fellows Yates 2020-09-04 19:55:40 +0200
  • 65fce5c2a5
         Update nfcore_custom.config James A. Fellows Yates 2020-09-04 19:52:46 +0200
  • 9df85be081
         Update mpcdf.md James A. Fellows Yates 2020-09-03 20:27:15 +0200
  • 09cd5cad65
         Update mpcdf.md James A. Fellows Yates 2020-09-03 20:25:37 +0200
  • 0a685c1cc2
         Update mpcdf.config James A. Fellows Yates 2020-09-03 20:24:11 +0200
  • a1c5dc5fde
         Update README.md James A. Fellows Yates 2020-09-03 20:22:27 +0200
  • 0501ae4c1a
         Started docs for mpcdf James A. Fellows Yates 2020-09-03 20:21:49 +0200
  • 42a1a15970
         Create mpcdf.config James A. Fellows Yates 2020-09-03 20:11:56 +0200
  • 6261add35e
         Merge pull request #12 from nf-core/master James A. Fellows Yates 2020-09-03 15:12:14 +0200
  • 3d744d9aea
         Merge pull request #176 from jfy133/master James A. Fellows Yates 2020-08-11 09:24:43 +0200
  • 09cfabd37f
         Add new microbiome_screening profile to docs James A. Fellows Yates 2020-08-11 09:20:31 +0200
  • c3fa87e4bc
         Add microbiome screening profile for NT sized MALT runs for nf-core/eager@SHH James A. Fellows Yates 2020-08-11 09:18:36 +0200
  • de9f5ab560
         Merge pull request #11 from nf-core/master James A. Fellows Yates 2020-08-11 09:10:13 +0200
  • 69a660da3b
         Merge pull request #175 from drpatelh/master Harshil Patel 2020-08-03 11:46:21 +0100
  • 165af5122f Update docs drpatelh 2020-08-03 11:39:23 +0100
  • b804076959 Remove hard Singularity version drpatelh 2020-08-03 11:38:10 +0100
  • 11f6107922
         Merge pull request #174 from maxibor/master Alexander Peltzer 2020-07-23 16:09:28 +0200
  • 69a0bd572b add temporary CDAG setting for SHH config maxibor 2020-07-23 15:38:28 +0200
  • d38ffc289b
         Merge pull request #173 from jfy133/shh-eager-hops-update James A. Fellows Yates 2020-07-20 11:34:49 +0200
  • 57ac9257a9
         Remove now deprecated EAGER flag for HOPS profile James A. Fellows Yates 2020-07-20 11:29:12 +0200
  • a498e98342
         Merge pull request #170 from jfy133/master Alexander Peltzer 2020-07-15 15:11:24 +0200
  • 84e03b8264
         Re-bump default walltimes after debugging/testing James A. Fellows Yates 2020-07-11 18:31:04 +0200
  • 8f6409d144
         Remove min support percent value to avoid confusion James A. Fellows Yates 2020-07-08 15:26:19 +0200
  • 1af9ce293c
         Update hops profile based on requests from pathogen group James A. Fellows Yates 2020-07-08 15:22:33 +0200
  • c57a404f18
         Add desc for hops James A. Fellows Yates 2020-07-08 10:45:43 +0200
  • 15dad7e2e7 Add caveats for EAGER @ SHH profiles jfy133 2020-07-08 09:47:03 +0200
  • 926c14f7ee Cleverer process time submission jfy133 2020-07-08 09:36:56 +0200
  • 563c27e1bb Try again to get better time resource submission jfy133 2020-07-08 09:36:28 +0200
  • c6905b609e
         Update shh.config James A. Fellows Yates 2020-07-08 09:25:21 +0200
  • b360ce26bc
         Update shh.config James A. Fellows Yates 2020-07-08 09:24:06 +0200
  • 31edb4b5d7
         Update shh.config James A. Fellows Yates 2020-07-08 09:20:00 +0200
  • aac3478e86
         Add better task time values to account for large data James A. Fellows Yates 2020-07-08 09:12:11 +0200
  • 737d826932
         Update shh.config James A. Fellows Yates 2020-07-08 08:36:04 +0200
  • ba24f1a1c8
         Merge pull request #168 from piotr-faba-ardigen/add_bi_config piotr-faba-ardigen 2020-07-07 14:56:43 +0200
  • b2e043ab59
         Add documentation for HOPS profile for eager @ SHH James A. Fellows Yates 2020-07-07 14:35:42 +0200
  • fcdbeaa446
         Merge branch 'master' into master James A. Fellows Yates 2020-07-07 14:34:10 +0200
  • af01fccba1
         Add a HOPS profile for nf-core/eager @ SHH James A. Fellows Yates 2020-07-07 14:31:11 +0200
  • 7bfe43cad5
         Merge pull request #169 from nf-core/shh-eager-update James A. Fellows Yates 2020-07-07 14:02:13 +0200
  • cb7a6f756a reduce complexity Piotr Faba 2020-07-07 13:48:28 +0200
  • 5517d2cbe0
         Remove default non-profile bwa parameters from eager profile James A. Fellows Yates 2020-07-07 13:29:13 +0200
  • 4181184f58 fix spaces Piotr Faba 2020-07-02 22:00:37 +0200
  • 4828e78708 fix error introduced earlier Piotr Faba 2020-07-02 21:57:44 +0200
  • 530da4d8c0
         Merge pull request #167 from jfy133/master James A. Fellows Yates 2020-06-30 11:33:29 +0200
  • c52428cd72
         Bump number of eager @shh retries to account for deep sequencing data James A. Fellows Yates 2020-06-30 08:19:25 +0200
  • 2801f25657
         Merge pull request #166 from adrlar/master Alexander Peltzer 2020-06-26 17:52:05 +0200