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  • 46182c7439 Fix markdown linting erros. Venkat Malladi 2021-11-18 17:55:16 -0600
  • b25bd1ce42
    Update docs/azurebatch.md Phil Ewels 2021-11-19 00:54:39 +0100
  • 72ccd44ad6 Remove storage name. Venkat Malladi 2021-11-18 17:52:51 -0600
  • ed4c1d5f22 Remove work_dir option. Venkat Malladi 2021-11-18 17:52:24 -0600
  • 286fa6753a
    Apply suggestions from code review Phil Ewels 2021-11-19 00:07:33 +0100
  • e090bbd5fe
    Merge pull request #241 from asafpr/master Phil Ewels 2021-11-19 00:03:11 +0100
  • a26b3bf1e3
    Merge branch 'master' into unibe_ibu Phil Ewels 2021-11-19 00:02:30 +0100
  • 15080d958e
    Merge pull request #283 from aunderwo/master Phil Ewels 2021-11-19 00:00:52 +0100
  • 13a8d7aebe Fix spelling. Venkat Malladi 2021-11-18 15:51:12 -0600
  • f25dc57f00 Fix headers. Venkat Malladi 2021-11-18 15:50:12 -0600
  • 1dacc2f3fe Fix liniting errors in headers. Venkat Malladi 2021-11-18 15:49:08 -0600
  • 845a9ce971 Update Readme with more inforamtion on the options. Venkat Malladi 2021-11-18 15:47:27 -0600
  • 219244f1b4 Add in sample datastorage for Illumina Platinum genomes. Venkat Malladi 2021-11-18 15:28:34 -0600
  • b1a9c2e4c6 Add in fake key. Venkat Malladi 2021-11-18 15:20:59 -0600
  • a8075ee938 Fix configuration to pass. Venkat Malladi 2021-11-18 15:15:23 -0600
  • 237f91a3b7 Add in minmum config for azure. Venkat Malladi 2021-11-18 14:51:39 -0600
  • 0866682e9b
    Merge pull request #296 from drpatelh/hostnames Maxime U. Garcia 2021-11-03 13:30:51 +0100
  • a098ad9e06 Add Chris as main contact at The Crick Harshil Patel 2021-11-03 11:11:05 +0000
  • 556a1cf344
    Merge pull request #294 from ewels/master Phil Ewels 2021-11-03 00:02:17 +0100
  • 501db6bd2b
    Update conf/uppmax.config Phil Ewels 2021-11-02 23:55:27 +0100
  • 448c662d20
    Merge pull request #295 from drpatelh/hostnames Phil Ewels 2021-11-02 15:29:13 +0100
  • c842ca70a7 Address review comments Phil Ewels 2021-11-02 13:32:19 +0100
  • 7aff8923ea Test remove params.hostnames entirely Harshil Patel 2021-11-02 10:52:14 +0000
  • adeff52f89 Change params.hostnames from map to string Harshil Patel 2021-11-02 10:37:53 +0000
  • 9a17fdb6d9
    Update conf/uppmax.config Phil Ewels 2021-11-02 09:58:04 +0100
  • c7dc9aa892 UPPMAX profile - minor tweaks Phil Ewels 2021-11-02 09:15:01 +0100
  • 0600ac1293
    Merge pull request #293 from pontus/bugfix/issue_291_part1 Phil Ewels 2021-11-02 08:54:14 +0100
  • a04b5079f0 Make memory checks use closed intervals Pontus Freyhult 2021-11-02 07:55:52 +0100
  • 5222d7ed9b added leicester profile Matiss Ozols 2021-10-21 19:08:06 +0100
  • 1f58ea42c7 added leicester profile Matiss Ozols 2021-10-21 19:06:03 +0100
  • 98a69683c2 added leicester profile Matiss Ozols 2021-10-21 19:04:48 +0100
  • d45a06a681 added leicester profile Matiss Ozols 2021-10-21 19:02:13 +0100
  • e8ce4fe8df added leicester profile Matiss Ozols 2021-10-21 18:59:17 +0100
  • e9ba223103 added leicester profile Matiss Ozols 2021-10-21 18:55:03 +0100
  • f8b932ae2d added leicester profile Matiss Ozols 2021-10-21 18:32:57 +0100
  • 5afa43ad15
    Merge pull request #289 from jfy133/eva-fix James A. Fellows Yates 2021-10-18 11:03:39 +0200
  • ffdb0a937f Take previous working one I think James A. Fellows Yates 2021-10-18 10:58:06 +0200
  • b269a577e6 Revert 1240k James A. Fellows Yates 2021-10-18 10:52:28 +0200
  • 7f94989b39
    Merge pull request #288 from nf-core/TCLamnidis-patch-1 James A. Fellows Yates 2021-10-18 08:45:19 +0200
  • e741ecb7a7
    Update eva.config Thiseas C. Lamnidis 2021-10-13 13:04:41 +0200
  • 92648c1c1f
    added 1240k profile Thiseas C. Lamnidis 2021-10-12 15:12:49 +0200
  • 8d68d76a44
    Merge pull request #287 from mahesh-panchal/add_snic_tmp Mahesh Binzer-Panchal 2021-10-11 10:38:50 +0200
  • ac815ce790
    Merge branch 'master' into add_snic_tmp Mahesh Binzer-Panchal 2021-10-11 09:57:49 +0200
  • 33ae41bc91
    Merge pull request #226 from pontus/master Pontus Freyhult 2021-10-10 12:05:07 +0200
  • 73b6b74c69
    Merge pull request #279 from pierrespc/master James A. Fellows Yates 2021-10-08 19:15:47 +0200
  • 98bbc2b744
    Linting James A. Fellows Yates 2021-10-08 14:11:39 +0200
  • b26e495e19
    Apply suggestions from code review James A. Fellows Yates 2021-10-08 14:08:51 +0200
  • 2d102eafbc format docs pierrespc 2021-10-08 13:46:47 +0200
  • 747a89b4c5
    Update conf/uppmax.config Mahesh Binzer-Panchal 2021-10-08 13:40:59 +0200
  • 035ab61f61 added unlimitedtime profile to maestro; changed cache for bwa process pierrespc 2021-10-08 09:05:46 +0200
  • e557e94bfb Add SNIC_TMP to config Mahesh Binzer-Panchal 2021-10-07 16:05:03 +0200
  • 4f8b0d6478
    Merge pull request #286 from FriederikeHanssen/cfc FriederikeHanssen 2021-10-05 10:50:08 +0200
  • f1756ba121
    Merge branch 'nf-core:master' into cfc FriederikeHanssen 2021-10-04 18:04:18 +0200
  • 1621585558 improving documentation pierrespc 2021-10-04 16:08:33 +0200
  • e5d4a357c5 clean doc pierrespc 2021-10-04 15:08:01 +0200
  • 0950eb3518
    Merge pull request #251 from phue/cbe_singularity_workaround Falko Hofmann 2021-10-04 13:24:53 +0200
  • f6e16f2872 Add check_resource to respect max_resource/max_cpus Rike 2021-10-04 10:14:02 +0200
  • 136fd44e0c corrected docs/maestro.config pierrespc 2021-09-29 13:50:56 +0200
  • f6266879d6 edited maestronuclear and maestromitocondrial configs. The latter has not been optimized yet pierrespc 2021-09-29 13:47:35 +0200
  • b71df6fe57 renamed eager pipeline config file pierrespc 2021-09-29 13:22:07 +0200
  • 9ea3e2096a long and normal qos profiles defined now in an unique maestro config file. maestro.config also defined in pipeline/eager for ressources assignation to specific processes pierrespc 2021-09-29 13:11:14 +0200
  • 8e554cd43c
    Merge pull request #285 from bbartholdy/master James A. Fellows Yates 2021-09-28 13:57:16 +0200
  • e750a6d445
    Update conf/alice.config Bjørn Peare Bartholdy 2021-09-28 13:34:12 +0200
  • e8b48416bc
    Update docs/alice.md James A. Fellows Yates 2021-09-28 12:52:31 +0200
  • ad83430632
    Update docs/alice.md Bjørn Peare Bartholdy 2021-09-28 12:43:54 +0200
  • 197bd6cfb1
    Merge branch 'nf-core:master' into master Bjørn Peare Bartholdy 2021-09-28 12:09:50 +0200
  • b6ccb46383 add ALICE profile bbartholdy 2021-09-28 12:08:27 +0200
  • 09418b5da9
    Merge pull request #284 from projectoriented/hasta Alexander Peltzer 2021-09-28 11:20:16 +0200
  • 79a79f7d8d added pipeline-specific config Mei Wu 2021-09-28 10:38:15 +0200
  • 735100ed0b updated readme Mei Wu 2021-09-27 16:37:34 +0200
  • c2d74b290a fix md Mei Wu 2021-09-27 16:25:02 +0200
  • a8a2027f70
    Merge branch 'master' into hasta Mei Wu 2021-09-27 16:12:23 +0200
  • d3b92bad9d fix lint Mei Wu 2021-09-27 16:11:18 +0200
  • 06fac1dcfc initial commit Mei Wu 2021-09-27 16:05:32 +0200
  • ae0adb056f initial commit Mei Wu 2021-09-27 16:05:19 +0200
  • 7469e20b4e change max_time diretcive in the correct place Anthony Underwood 2021-09-25 09:23:24 +0100
  • acada75ffe
    Merge pull request #282 from aunderwo/master Alexander Peltzer 2021-09-23 16:17:17 +0200
  • 3701137740
    Merge branch 'nf-core:master' into master Anthony Underwood 2021-09-23 12:03:38 +0100
  • 6a970dc4a8
    update max time for long queue Anthony Underwood 2021-09-23 11:59:45 +0100
  • 1cbe2759c4
    fix invalid rapid qos selection Patrick Hüther 2021-09-22 11:54:27 +0200
  • 3e22b85b02 maestro only for normal qos pierrespc 2021-09-22 10:13:46 +0200
  • f4c240790a
    Merge pull request #281 from aunderwo/master Harshil Patel 2021-09-21 20:47:58 +0100
  • 50df2105fb update long jobs to be submitted to the long queue Anthony Underwood 2021-09-21 14:42:59 +0100
  • 3b593d46ec merged two pasteur config files for maestro pierrespc 2021-09-20 15:14:50 +0200
  • 5068e4806f
    Merge pull request #271 from theoportlock/master Harshil Patel 2021-09-17 13:36:19 +0100
  • 3b95fd9ee3
    Update conf/rosalind.config Harshil Patel 2021-09-17 13:15:09 +0100
  • 0fd5265f7b Updates the README theoportlock 2021-09-17 13:21:38 +0200
  • 9116a09afe Fixes formatting and ignore_params theoportlock 2021-09-17 11:48:22 +0200
  • 4614ff6f45 change max mem in Normal pierrespc 2021-09-16 16:50:45 +0200
  • de2a745fde change type in Normal name pierrespc 2021-09-16 16:48:26 +0200
  • b9682bbc91 requires files edited pierrespc 2021-09-16 12:53:17 +0200
  • 482e7cf8de 2 config files for Maestro HPC at Pasteur Institute, Paris pierrespc 2021-09-16 12:40:56 +0200
  • b8e60c503f
    Merge pull request #278 from marcmtk/computerome Harshil Patel 2021-09-15 19:29:13 +0100
  • a55c3c04eb
    Update computerome.config Marc Trunjer Kusk Nielsen 2021-09-15 19:54:51 +0200
  • 09c63120a6
    Merge pull request #277 from marcmtk/computerome Harshil Patel 2021-09-15 13:35:37 +0100
  • 8b29b5584e
    Update computerome.config Marc Trunjer Kusk Nielsen 2021-09-15 14:20:02 +0200
  • ab8a9ad0b8
    Update computerome.config Marc Trunjer Kusk Nielsen 2021-09-15 13:27:23 +0200
  • 9c97220919 Merge branch 'master' of https://github.com/theoportlock/configs theoportlock 2021-09-15 11:43:09 +0200
  • 3c86f8f47c Removes the broken clusterOptions theoportlock 2021-09-15 11:34:41 +0200
  • 9a8644ef43
    Update computerome.md Marc Trunjer Kusk Nielsen 2021-09-15 11:10:02 +0200