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Author	SHA1	Message	Date
Gregor Sturm	7121879714	Add: All outputs should be named	2020-07-14 16:13:05 +02:00
JoseEspinosa	0ffa739cd0	Changing fasta_sizes by chrom_sizes input path for genomecov	2020-07-14 16:09:01 +02:00
JoseEspinosa	9d79d64eb9	Module genomecov added	2020-07-14 16:00:10 +02:00
JoseEspinosa	f6894c7d3a	Module complementbed added	2020-07-14 15:50:35 +02:00
Gregor Sturm	8f3718795b	Fix markdownlint ... Move markdownlint.yml to root directory. Like that it is automatically discovered and applied by most IDEs	2020-07-14 12:21:33 +02:00
Gregor Sturm	fe882f1579	Add software dependencies and version string to requirements list	2020-07-14 12:07:41 +02:00
Gregor Sturm	4ee6ddc7ab	Update README	2020-07-14 10:55:38 +02:00
Phil Ewels	8155270653	Merge pull request #38 from ewels/master ... Fix up cutadapt tests	2020-07-11 17:16:26 +02:00
Phil Ewels	31c0f617b9	Fix up cutadapt tests	2020-07-11 17:14:14 +02:00
Phil Ewels	abfd112964	Merge pull request #37 from ewels/master ... Cutadapt - merge tests into one	2020-07-11 17:09:50 +02:00
Phil Ewels	f36902b9af	Cutadapt - merge tests into one	2020-07-11 17:09:06 +02:00
Phil Ewels	7ae79df07c	Merge pull request #36 from ewels/change-filestructure ... Restructure file hierarchy	2020-07-11 14:53:33 +02:00
Phil Ewels	905e842f36	Update more paths	2020-07-11 14:36:12 +02:00
Phil Ewels	d3f3432451	Update test file imports	2020-07-11 14:33:12 +02:00
Phil Ewels	a6b2485dab	Move social preview image	2020-07-11 14:28:58 +02:00
Phil Ewels	cffb8b63ab	Move to new tests/ folder	2020-07-11 14:28:26 +02:00
Phil Ewels	014fef2e92	Rename tools to software	2020-07-11 14:27:21 +02:00
Phil Ewels	edd508487b	Merge pull request #35 from ewels/editor-config ... Editor config	2020-07-11 14:20:37 +02:00
Phil Ewels	229bd5d085	Update test-datasets	2020-07-11 13:57:17 +02:00
Phil Ewels	47d55001fa	Fix YAML validation errors	2020-07-11 13:54:12 +02:00
Phil Ewels	263f48d520	Fix markdownlint	2020-07-11 13:48:11 +02:00
Phil Ewels	45fb2ff4f4	Remove verbose job names	2020-07-11 13:45:08 +02:00
Phil Ewels	fc53a6f0b5	Added markdown lint config file	2020-07-11 13:44:28 +02:00
Phil Ewels	ae38a9bf41	Fix editor config styles	2020-07-11 13:42:13 +02:00
Phil Ewels	a547f27f21	New GitHub Action to lint code style	2020-07-11 13:41:31 +02:00
Phil Ewels	0241467b1e	Merge pull request #33 from nf-core/grst-patch-1 ... Create .editorconfig	2020-07-11 13:32:05 +02:00
Phil Ewels	cb89722ea8	Merge pull request #34 from luslab/feat-mod-umitools ... Added Umi-tools module covering the dedup function	2020-07-11 13:31:40 +02:00
Phil Ewels	81b1d6081c	Merge pull request #31 from FelixKrueger/hisat2 ... Added HISAT2 module and test workflow	2020-07-11 13:29:02 +02:00
Phil Ewels	7ef2a97882	Update tools/hisat2/main.nf	2020-07-11 13:28:41 +02:00
Phil Ewels	23c2fd8520	Apply suggestions from code review	2020-07-11 13:27:56 +02:00
Phil Ewels	edda7433d3	Merge pull request #30 from FelixKrueger/bowtie2 ... Added Bowtie2 module and test workflow	2020-07-11 13:27:20 +02:00
Phil Ewels	2fee617b5b	Update tools/bowtie2/main.nf	2020-07-11 13:27:05 +02:00
Phil Ewels	ccea438b49	Update tools/bowtie2/main.nf	2020-07-11 13:26:50 +02:00
Phil Ewels	a1ff2bd677	Merge pull request #29 from FelixKrueger/multiqc ... Added DSL2 module for MultiQC	2020-07-11 13:26:01 +02:00
Phil Ewels	5aaacf8173	Update tools/multiqc/main.nf	2020-07-11 13:25:51 +02:00
Phil Ewels	36c4cfb3b0	Merge pull request #28 from FelixKrueger/trim_galore ... Added functional Trim Galore module	2020-07-11 13:24:09 +02:00
Phil Ewels	c627da09cc	Merge pull request #27 from FelixKrueger/fastqc ... FastQC module is working and now accepting arguments	2020-07-11 13:23:41 +02:00
Phil Ewels	05c6d2557d	Merge pull request #24 from FelixKrueger/fastq_screen ... Added FastQ Screen module	2020-07-11 13:23:03 +02:00
Phil Ewels	89cfc271dd	Merge pull request #22 from Jeremy1805/master ... Added the bwa short alignment (bwa mem) module	2020-07-11 13:21:34 +02:00
Phil Ewels	8b6065764e	Merge branch 'master' into tcoffee_dev	2020-07-11 13:12:17 +02:00
Phil Ewels	dce77ce3f1	Merge branch 'master' of github.com:nf-core/modules	2020-07-11 13:08:33 +02:00
Phil Ewels	21711813c1	Merge pull request #18 from annacprice/shovill ... initial commit of shovill	2020-07-11 13:00:43 +02:00
Harshil Patel	f422384e4d	Merge pull request #13 from MaxUlysse/dev ... Add social preview image	2020-07-10 11:34:30 +01:00
Chris Cheshire	cad6c7d781	luslab-umitools | Corrections to hash checking	2020-06-29 10:37:53 +01:00
Chris Cheshire	128fd6fc76	luslab-umitools | Rudimentary hash checking of files	2020-06-26 11:24:05 +01:00
Chris Cheshire	3d81018c79	luslab-umitools | Updated doc file	2020-06-26 09:10:19 +01:00
Chris Cheshire	0da0f15998	luslab-umitools | Dropped process_name param	2020-06-26 09:06:37 +01:00
Chris Cheshire	afb1adebb6	luslab-umitools | Added index output from module	2020-06-26 09:04:15 +01:00
Chris Cheshire	3e26c218c2	luslab-umitools | Combined bam/bai into single channel + clean up	2020-06-26 08:36:11 +01:00
Chris Cheshire	cb58bea33f	luslab-umitools | Changed all tabs to 4-space	2020-06-26 08:23:16 +01:00