378 commits

Author	SHA1	Message	Date
Matthieu Muffato	dda1d810b1	Latest stable version (rather than an edge one)	2022-07-20 14:35:39 +01:00
Matthieu Muffato	1ee20f0bb0	2 cores should be enough for the nextflow manager itself	2022-07-20 14:35:22 +01:00
Matthieu Muffato	60dc451569	The oversubscribed queue is recommended for workflow managers	2022-07-20 14:34:59 +01:00
Matthieu Muffato	1f1a9ac5f0	ISG provide the module, not the pathogen informatics team	2022-07-20 14:34:25 +01:00
Matthieu Muffato	2aad355fbf	The config doesn't mandate Singularity any more (Conda is fine too)	2022-07-20 14:32:43 +01:00
Priyanka Surana	fd87fbcb9d	Sanger profile update	2022-07-20 13:22:51 +01:00
Bruno Grande	6f0d9e6c43	Complete check_max() move to global config	2022-06-23 10:10:28 -07:00
Bruno Grande	1c7230cb08	Add Sage-specific Sarek config	2022-06-23 09:15:42 -07:00
Bruno Grande	2898736cbe	Add Sage Bionetworks nf-core configuration	2022-06-08 14:16:52 -07:00
Åshild J. Vågene	34feaa8b6b	prettier output	2022-06-03 17:08:15 +02:00
Åshild J. Vågene	2d82218318	typo	2022-06-03 16:42:08 +02:00
Åshild J. Vågene	144ca851c1	Update mjolnir_globe.md	2022-06-03 15:36:19 +02:00
Phil Ewels	b51059a3ae	Merge branch 'master' into config_ucph-mjolnir_ash	2022-06-03 13:21:36 +02:00
James A. Fellows Yates	7353fb257d	Merge pull request #380 from jfy133/taxprofiler ... Add MAG @ EVA profile	2022-06-03 12:54:47 +02:00
James A. Fellows Yates	97d57539e3	Apply suggestions from code review ... Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>	2022-06-03 12:51:20 +02:00
James Fellows Yates	5a67eba04c	Add MAG @ EVA profile	2022-06-03 12:41:08 +02:00
Åshild J. Vågene	1d23ba9264	change name of tmp dir to .tmp_nfcore	2022-06-02 16:40:29 +02:00
Åshild J. Vågene	0f6fb0c10d	Update mjolnir_globe.md	2022-06-02 16:00:22 +02:00
Åshild J. Vågene	e871dc87f9	Update mjolnir_globe.md	2022-06-02 15:59:11 +02:00
Åshild J. Vågene	940077190b	Update mjolnir_globe.md	2022-06-02 15:38:40 +02:00
Åshild J. Vågene	2988e33576	Create mjolnir_globe.md	2022-06-02 15:38:07 +02:00
Nicolas Vannieuwkerke	867dcabd97	Fix type in VSC UGent	2022-05-20 10:36:07 +02:00
Nicolas Vannieuwkerke	8432e4d1dc	typo	2022-05-20 09:49:42 +02:00
Nicolas Vannieuwkerke	fa39478a2d	prettier	2022-05-20 09:49:04 +02:00
Nicolas Vannieuwkerke	c2b26a734d	automated the internal cache dir location for singularity	2022-05-20 09:48:19 +02:00
nvnieuwk	b2f7538b33	Update docs/vsc_ugent.md ... Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>	2022-05-20 09:42:31 +02:00
nvnieuwk	a3583262c2	Update docs/vsc_ugent.md ... Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>	2022-05-20 09:41:02 +02:00
nvnieuwk	dba85e53fa	Update docs/vsc_ugent.md ... Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>	2022-05-20 09:40:55 +02:00
Nicolas Vannieuwkerke	a2d77df2ee	added default scratch location to markdown file	2022-05-20 09:32:14 +02:00
Nicolas Vannieuwkerke	2f74c91145	prettier	2022-05-20 09:18:33 +02:00
Nicolas Vannieuwkerke	cc86e6b270	Added the VSC UGent profile	2022-05-20 09:12:18 +02:00
Sarah Guinchard	be9711731a	Merge pull request #375 from nf-core/ifb_core-config-update ... Ifb core config update	2022-05-13 14:45:44 +02:00
sofstam	ca4cdcffee	Fix typo	2022-05-12 15:07:30 +02:00
Sarah Guinchard	84457cc655	Update documentation	2022-05-12 11:01:36 +02:00
sofstam	c59149d64c	Update docs for hasta config	2022-05-12 10:47:03 +02:00
James Fellows Yates	e1f780d976	Add taxprofiler for eVA	2022-05-12 07:54:17 +01:00
James Fellows Yates	4885b672b1	Prettier	2022-04-25 11:46:32 +02:00
Alex Rajewski	766eb450be	usage notes	2022-04-22 10:23:19 -07:00
James A. Fellows Yates	b0c9ac9be8	Update eva.md	2022-03-28 09:02:26 +02:00
b97pla	9a6cdfc21e	removed process-specific requirements for sarek, request miarka high-mem node	2022-03-24 14:25:43 +01:00
b97pla	5466d927f1	added requirements for uppmax cluster miarka	2022-03-23 15:29:40 +01:00
Edmund Miller	6c37bf3b20	style: Run prettier	2022-03-21 19:23:28 -05:00
James A. Fellows Yates	962d86d604	Merge pull request #346 from sagc-bioinformatics/sahmri ... Added SAHMRI profile	2022-03-18 13:01:36 +01:00
James A. Fellows Yates	a2e2e94333	Merge pull request #344 from njspix/vai ... Add VAI configuration	2022-03-14 14:36:00 +01:00
Nathan Watson-Haigh	dba3fb4c1d	Added SAHMRI HPC profile docs	2022-03-13 00:05:34 +10:30
Nathan Watson-Haigh	b638694bd0	Added SAHMRI HPC profile	2022-03-12 21:17:33 +10:30
Matiss	6c79c75eec	Merge pull request #290 from maxozo/master ... added leicester profile	2022-03-11 09:21:09 +00:00
Spix	429c7b4fa8	initial commit	2022-03-07 15:01:46 -05:00
Alexander Peltzer	d0d86bfb2a	Merge pull request #339 from jfy133/rnaseq_mpcdf ... Add RNASEQ specific config for MPCDF	2022-03-07 13:59:08 +01:00
James A. Fellows Yates	975fca6721	Apply suggestions from code review	2022-03-07 13:51:00 +01:00