SPearce
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0bfedde296
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Initial attempt at a CRUKMI config file
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2022-08-12 15:43:22 +01:00 |
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Gwenna Breton
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0e4f2b40d3
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Added email of IT group
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2022-08-08 16:14:17 +02:00 |
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Gwenna Breton
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2740b5efbf
|
Update docs/medair.md
Fixed typo
Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
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2022-08-08 16:08:05 +02:00 |
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Gwenna Breton
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648025c1ce
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Clarified where to store singularity images
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2022-08-08 16:04:21 +02:00 |
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Gwenna Breton
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6aa78833c3
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Merge branch 'master' into medair
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2022-08-01 16:46:55 +02:00 |
|
Matthieu Muffato
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dda1d810b1
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Latest stable version (rather than an edge one)
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2022-07-20 14:35:39 +01:00 |
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Matthieu Muffato
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1ee20f0bb0
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2 cores should be enough for the nextflow manager itself
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2022-07-20 14:35:22 +01:00 |
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Matthieu Muffato
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60dc451569
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The oversubscribed queue is recommended for workflow managers
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2022-07-20 14:34:59 +01:00 |
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Matthieu Muffato
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1f1a9ac5f0
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ISG provide the module, not the pathogen informatics team
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2022-07-20 14:34:25 +01:00 |
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Matthieu Muffato
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2aad355fbf
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The config doesn't mandate Singularity any more (Conda is fine too)
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2022-07-20 14:32:43 +01:00 |
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Priyanka Surana
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fd87fbcb9d
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Sanger profile update
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2022-07-20 13:22:51 +01:00 |
|
Gwenna Breton
|
6b9cdc8ef3
|
Added info about Sentieon singularities
|
2022-07-07 14:24:15 +02:00 |
|
Gwenna Breton
|
746db14d47
|
Update medair.md
- updated text about storing singularity images
- updated text about using profiles
|
2022-07-07 11:42:46 +02:00 |
|
Gwennid
|
96fd2bf217
|
Fixed formatting
|
2022-07-06 11:42:05 +02:00 |
|
Gwenna Breton
|
1d13dd9fbc
|
Changed where cgg-it is mentioned
|
2022-07-06 11:24:03 +02:00 |
|
Gwenna Breton
|
235097e58e
|
Addressed review comments
- removed mention of iGenomes
- clarified whom to contact for support
|
2022-07-06 11:20:59 +02:00 |
|
Gwenna Breton
|
1d7a34b11f
|
Removed comment about internal doc
|
2022-07-06 11:17:58 +02:00 |
|
Gwenna Breton
|
b202ad70ac
|
Removed mention of specific module versions
|
2022-07-06 11:16:38 +02:00 |
|
Gwenna Breton
|
84174043e4
|
Added details for nf-core pipelines download
|
2022-06-30 16:41:50 +02:00 |
|
Gwenna Breton
|
2398110ea5
|
Added info on dowloading pipelines
|
2022-06-30 14:24:17 +02:00 |
|
Gwenna Breton
|
22f73b06f9
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Updated info about the different profiles
|
2022-06-30 12:00:05 +02:00 |
|
Gwenna Breton
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f718025e79
|
Added doc file for medair
|
2022-06-30 11:43:04 +02:00 |
|
Bruno Grande
|
6f0d9e6c43
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Complete check_max() move to global config
|
2022-06-23 10:10:28 -07:00 |
|
Bruno Grande
|
1c7230cb08
|
Add Sage-specific Sarek config
|
2022-06-23 09:15:42 -07:00 |
|
Bruno Grande
|
2898736cbe
|
Add Sage Bionetworks nf-core configuration
|
2022-06-08 14:16:52 -07:00 |
|
Åshild J. Vågene
|
34feaa8b6b
|
prettier output
|
2022-06-03 17:08:15 +02:00 |
|
Åshild J. Vågene
|
2d82218318
|
typo
|
2022-06-03 16:42:08 +02:00 |
|
Åshild J. Vågene
|
144ca851c1
|
Update mjolnir_globe.md
|
2022-06-03 15:36:19 +02:00 |
|
Phil Ewels
|
b51059a3ae
|
Merge branch 'master' into config_ucph-mjolnir_ash
|
2022-06-03 13:21:36 +02:00 |
|
James A. Fellows Yates
|
7353fb257d
|
Merge pull request #380 from jfy133/taxprofiler
Add MAG @ EVA profile
|
2022-06-03 12:54:47 +02:00 |
|
James A. Fellows Yates
|
97d57539e3
|
Apply suggestions from code review
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
|
2022-06-03 12:51:20 +02:00 |
|
James Fellows Yates
|
5a67eba04c
|
Add MAG @ EVA profile
|
2022-06-03 12:41:08 +02:00 |
|
Åshild J. Vågene
|
1d23ba9264
|
change name of tmp dir to .tmp_nfcore
|
2022-06-02 16:40:29 +02:00 |
|
Åshild J. Vågene
|
0f6fb0c10d
|
Update mjolnir_globe.md
|
2022-06-02 16:00:22 +02:00 |
|
Åshild J. Vågene
|
e871dc87f9
|
Update mjolnir_globe.md
|
2022-06-02 15:59:11 +02:00 |
|
Åshild J. Vågene
|
940077190b
|
Update mjolnir_globe.md
|
2022-06-02 15:38:40 +02:00 |
|
Åshild J. Vågene
|
2988e33576
|
Create mjolnir_globe.md
|
2022-06-02 15:38:07 +02:00 |
|
Nicolas Vannieuwkerke
|
867dcabd97
|
Fix type in VSC UGent
|
2022-05-20 10:36:07 +02:00 |
|
Nicolas Vannieuwkerke
|
8432e4d1dc
|
typo
|
2022-05-20 09:49:42 +02:00 |
|
Nicolas Vannieuwkerke
|
fa39478a2d
|
prettier
|
2022-05-20 09:49:04 +02:00 |
|
Nicolas Vannieuwkerke
|
c2b26a734d
|
automated the internal cache dir location for singularity
|
2022-05-20 09:48:19 +02:00 |
|
nvnieuwk
|
b2f7538b33
|
Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
|
2022-05-20 09:42:31 +02:00 |
|
nvnieuwk
|
a3583262c2
|
Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
|
2022-05-20 09:41:02 +02:00 |
|
nvnieuwk
|
dba85e53fa
|
Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
|
2022-05-20 09:40:55 +02:00 |
|
Nicolas Vannieuwkerke
|
a2d77df2ee
|
added default scratch location to markdown file
|
2022-05-20 09:32:14 +02:00 |
|
Nicolas Vannieuwkerke
|
2f74c91145
|
prettier
|
2022-05-20 09:18:33 +02:00 |
|
Nicolas Vannieuwkerke
|
cc86e6b270
|
Added the VSC UGent profile
|
2022-05-20 09:12:18 +02:00 |
|
Sarah Guinchard
|
be9711731a
|
Merge pull request #375 from nf-core/ifb_core-config-update
Ifb core config update
|
2022-05-13 14:45:44 +02:00 |
|
sofstam
|
ca4cdcffee
|
Fix typo
|
2022-05-12 15:07:30 +02:00 |
|
Sarah Guinchard
|
84457cc655
|
Update documentation
|
2022-05-12 11:01:36 +02:00 |
|