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394 commits

Author SHA1 Message Date
SPearce
0bfedde296 Initial attempt at a CRUKMI config file 2022-08-12 15:43:22 +01:00
Gwenna Breton
0e4f2b40d3
Added email of IT group 2022-08-08 16:14:17 +02:00
Gwenna Breton
2740b5efbf
Update docs/medair.md
Fixed typo

Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
2022-08-08 16:08:05 +02:00
Gwenna Breton
648025c1ce
Clarified where to store singularity images 2022-08-08 16:04:21 +02:00
Gwenna Breton
6aa78833c3
Merge branch 'master' into medair 2022-08-01 16:46:55 +02:00
Matthieu Muffato
dda1d810b1 Latest stable version (rather than an edge one) 2022-07-20 14:35:39 +01:00
Matthieu Muffato
1ee20f0bb0 2 cores should be enough for the nextflow manager itself 2022-07-20 14:35:22 +01:00
Matthieu Muffato
60dc451569 The oversubscribed queue is recommended for workflow managers 2022-07-20 14:34:59 +01:00
Matthieu Muffato
1f1a9ac5f0 ISG provide the module, not the pathogen informatics team 2022-07-20 14:34:25 +01:00
Matthieu Muffato
2aad355fbf The config doesn't mandate Singularity any more (Conda is fine too) 2022-07-20 14:32:43 +01:00
Priyanka Surana
fd87fbcb9d Sanger profile update 2022-07-20 13:22:51 +01:00
Gwenna Breton
6b9cdc8ef3
Added info about Sentieon singularities 2022-07-07 14:24:15 +02:00
Gwenna Breton
746db14d47
Update medair.md
- updated text about storing singularity images
- updated text about using profiles
2022-07-07 11:42:46 +02:00
Gwennid
96fd2bf217 Fixed formatting 2022-07-06 11:42:05 +02:00
Gwenna Breton
1d13dd9fbc
Changed where cgg-it is mentioned 2022-07-06 11:24:03 +02:00
Gwenna Breton
235097e58e
Addressed review comments
- removed mention of iGenomes
- clarified whom to contact for support
2022-07-06 11:20:59 +02:00
Gwenna Breton
1d7a34b11f
Removed comment about internal doc 2022-07-06 11:17:58 +02:00
Gwenna Breton
b202ad70ac
Removed mention of specific module versions 2022-07-06 11:16:38 +02:00
Gwenna Breton
84174043e4
Added details for nf-core pipelines download 2022-06-30 16:41:50 +02:00
Gwenna Breton
2398110ea5
Added info on dowloading pipelines 2022-06-30 14:24:17 +02:00
Gwenna Breton
22f73b06f9 Updated info about the different profiles 2022-06-30 12:00:05 +02:00
Gwenna Breton
f718025e79 Added doc file for medair 2022-06-30 11:43:04 +02:00
Bruno Grande
6f0d9e6c43 Complete check_max() move to global config 2022-06-23 10:10:28 -07:00
Bruno Grande
1c7230cb08 Add Sage-specific Sarek config 2022-06-23 09:15:42 -07:00
Bruno Grande
2898736cbe Add Sage Bionetworks nf-core configuration 2022-06-08 14:16:52 -07:00
Åshild J. Vågene
34feaa8b6b
prettier output 2022-06-03 17:08:15 +02:00
Åshild J. Vågene
2d82218318
typo 2022-06-03 16:42:08 +02:00
Åshild J. Vågene
144ca851c1
Update mjolnir_globe.md 2022-06-03 15:36:19 +02:00
Phil Ewels
b51059a3ae
Merge branch 'master' into config_ucph-mjolnir_ash 2022-06-03 13:21:36 +02:00
James A. Fellows Yates
7353fb257d
Merge pull request #380 from jfy133/taxprofiler
Add MAG @ EVA profile
2022-06-03 12:54:47 +02:00
James A. Fellows Yates
97d57539e3
Apply suggestions from code review
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
2022-06-03 12:51:20 +02:00
James Fellows Yates
5a67eba04c Add MAG @ EVA profile 2022-06-03 12:41:08 +02:00
Åshild J. Vågene
1d23ba9264
change name of tmp dir to .tmp_nfcore 2022-06-02 16:40:29 +02:00
Åshild J. Vågene
0f6fb0c10d
Update mjolnir_globe.md 2022-06-02 16:00:22 +02:00
Åshild J. Vågene
e871dc87f9
Update mjolnir_globe.md 2022-06-02 15:59:11 +02:00
Åshild J. Vågene
940077190b
Update mjolnir_globe.md 2022-06-02 15:38:40 +02:00
Åshild J. Vågene
2988e33576
Create mjolnir_globe.md 2022-06-02 15:38:07 +02:00
Nicolas Vannieuwkerke
867dcabd97 Fix type in VSC UGent 2022-05-20 10:36:07 +02:00
Nicolas Vannieuwkerke
8432e4d1dc typo 2022-05-20 09:49:42 +02:00
Nicolas Vannieuwkerke
fa39478a2d prettier 2022-05-20 09:49:04 +02:00
Nicolas Vannieuwkerke
c2b26a734d automated the internal cache dir location for singularity 2022-05-20 09:48:19 +02:00
nvnieuwk
b2f7538b33
Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
2022-05-20 09:42:31 +02:00
nvnieuwk
a3583262c2
Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
2022-05-20 09:41:02 +02:00
nvnieuwk
dba85e53fa
Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
2022-05-20 09:40:55 +02:00
Nicolas Vannieuwkerke
a2d77df2ee added default scratch location to markdown file 2022-05-20 09:32:14 +02:00
Nicolas Vannieuwkerke
2f74c91145 prettier 2022-05-20 09:18:33 +02:00
Nicolas Vannieuwkerke
cc86e6b270 Added the VSC UGent profile 2022-05-20 09:12:18 +02:00
Sarah Guinchard
be9711731a
Merge pull request #375 from nf-core/ifb_core-config-update
Ifb core config update
2022-05-13 14:45:44 +02:00
sofstam
ca4cdcffee Fix typo 2022-05-12 15:07:30 +02:00
Sarah Guinchard
84457cc655 Update documentation 2022-05-12 11:01:36 +02:00