829 commits

Author	SHA1	Message	Date
Austyn Trull	8d5ae4c3ab	Committing changes made by Brandon Wilk so that singularity containers will use scratch space	2022-08-23 15:30:13 -05:00
Ramprasad Neethiraj	a6cce4ab6a	Merge branch 'master' into feat/hasta_java_memory_fix	2022-08-18 13:36:08 +02:00
Gwenna Breton	ffefefe0ab	Added contact emails	2022-08-08 16:11:55 +02:00
Gwenna Breton	6aa78833c3	Merge branch 'master' into medair	2022-08-01 16:46:55 +02:00
James A. Fellows Yates	0b47849532	Update mpcdf.config	2022-07-27 14:23:29 +02:00
Priyanka Surana	58508c4fbc	Sanger profile update	2022-07-20 13:14:42 +01:00
Nicolas Vannieuwkerke	f40825ac14	lower submission rate for vsc_ugent	2022-07-14 15:50:50 +02:00
Harshil Patel	2ab126fa4d	Update default Nextclade dataset to 2022-06-14T12:00:00Z	2022-07-11 18:28:41 +01:00
Gwenna Breton	4538e8aa36	Update medair.config ... - added path to singularity image for Sentieon - harmonized alignment	2022-07-07 13:41:42 +02:00
Gwennid	b6e2d03a02	Added Singularity cache dir	2022-07-06 13:59:35 +02:00
James A. Fellows Yates	a141ff626b	Merge branch 'master' into eva-java-correction	2022-07-04 13:35:50 +02:00
Gwenna Breton	b3a6e199ca	Merge branch 'nf-core:master' into medair	2022-07-01 17:02:56 +02:00
Nicolas Vannieuwkerke	8a74c517d4	Merge branch 'vsc-ugent-fix' of github.com:nvnieuwk/configs into vsc-ugent-fix	2022-07-01 16:16:22 +02:00
Nicolas Vannieuwkerke	1e34595280	removed queue size limit	2022-07-01 16:16:18 +02:00
nvnieuwk	5ff845cde7	Merge branch 'master' into vsc-ugent-fix	2022-07-01 16:10:45 +02:00
Nicolas Vannieuwkerke	fa949a069e	added queuesize	2022-07-01 16:01:19 +02:00
Nicolas Vannieuwkerke	abfa3f47f4	lowered the job submit rate of vsc_ugent	2022-07-01 15:55:44 +02:00
Gwenna Breton	bb35d8e5d1	Added conf file for medair	2022-06-30 11:42:36 +02:00
Bruno Grande	6f0d9e6c43	Complete check_max() move to global config	2022-06-23 10:10:28 -07:00
Bruno Grande	a19d79f6ff	Move check_max() to global config	2022-06-23 09:44:16 -07:00
Bruno Grande	1c7230cb08	Add Sage-specific Sarek config	2022-06-23 09:15:42 -07:00
Bruno Grande	37121faf4a	Fix typoe with label name	2022-06-22 14:37:43 -07:00
Bruno Grande	ecd898584d	Handle Sarek-specific max labels	2022-06-22 13:54:13 -07:00
Bruno Grande	c7093dee13	Reduce max_memory to fit on an instance	2022-06-16 12:37:32 -07:00
James Fellows Yates	acabcbd9e8	Use _JAVA_OPTIONS instead	2022-06-15 15:27:40 +02:00
James Fellows Yates	76b0d1dd85	Merge branch 'eva-java-correction' of github.com:jfy133/nf-core-configs into eva-java-correction	2022-06-15 15:22:25 +02:00
James Fellows Yates	58dd9d49c7	Move beforeScript exports to env scope	2022-06-15 15:21:20 +02:00
Emil Bertilsson	c8c795595a	Merge branch 'nf-core:master' into feat/hasta_java_memory_fix	2022-06-09 15:10:46 +02:00
Emil Bertilsson	72e995f326	Adds generic fix for java memory issue on slurm	2022-06-09 10:28:20 +02:00
Bruno Grande	2898736cbe	Add Sage Bionetworks nf-core configuration	2022-06-08 14:16:52 -07:00
Nicolas Vannieuwkerke	b6d38859f0	fix for singularity cache for vsc_ugent profile	2022-06-08 16:28:28 +02:00
Nicolas Vannieuwkerke	98eacf030d	fix for singularity cache for vsc_ugent profile	2022-06-08 16:27:48 +02:00
Maxime U. Garcia	844d250011	Merge branch 'master' into eva-java-correction	2022-06-07 11:57:05 +02:00
Nicolas Vannieuwkerke	44e25830e4	update for vsc_ugent	2022-06-07 11:33:22 +02:00
James A. Fellows Yates	46fba9c597	Update eva.config	2022-06-03 21:10:48 +02:00
James A. Fellows Yates	05cc8a08f1	Update eva.config	2022-06-03 21:08:19 +02:00
Åshild J. Vågene	ed526530d2	Rename mjolnir_globe to mjolnir_globe.config	2022-06-03 17:15:12 +02:00
Åshild J. Vågene	22ed36a73d	cacheDir update	2022-06-03 15:33:58 +02:00
James Fellows Yates	9ef52af084	Increase overhead	2022-06-03 14:24:27 +02:00
James Fellows Yates	c40ebb9acf	Add overhead for get_software_versions	2022-06-03 14:21:41 +02:00
James Fellows Yates	df0429ce9d	Replace oracle specific _JAVA_OPTIONS to portable JAVA_TOOLS_OPTIONS	2022-06-03 14:20:39 +02:00
Phil Ewels	b51059a3ae	Merge branch 'master' into config_ucph-mjolnir_ash	2022-06-03 13:21:36 +02:00
James A. Fellows Yates	7353fb257d	Merge pull request #380 from jfy133/taxprofiler ... Add MAG @ EVA profile	2022-06-03 12:54:47 +02:00
James Fellows Yates	5a67eba04c	Add MAG @ EVA profile	2022-06-03 12:41:08 +02:00
Åshild J. Vågene	9b9a6f0188	Update and rename holo_globe to mjolnir_globe	2022-06-02 15:09:52 +02:00
Åshild J. Vågene	6d9cc91c5f	Update holo_globe	2022-06-02 15:03:47 +02:00
Åshild J. Vågene	64fe4677b1	Update holo_globe	2022-05-31 15:26:23 +02:00
Åshild J. Vågene	0b51552e88	Update holo_globe	2022-05-31 15:23:43 +02:00
Emil Bertilsson	80e2a50a2f	Merge pull request #378 from raysloks/feat/hasta_java_memory_fix ... Feat/hasta java memory fix	2022-05-30 14:40:52 +02:00
Emil	8453f6b41a	Moves qualimap arg to pipeline-specific config	2022-05-30 12:58:12 +02:00