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Author	SHA1	Message	Date
ameynert	937538d160	Fix typo in file path	2021-07-23 10:18:24 +01:00
ameynert	5c56e13747	Fix typo	2021-07-23 10:18:02 +01:00
ameynert	3bfaf65450	Fixed trailing space	2021-07-23 09:39:32 +01:00
ameynert	26183d9883	Updated eddie documentation for singularity cache directory	2021-07-23 09:35:15 +01:00
ameynert	238d6e5e96	Added cacheDir to singularity in eddie profile	2021-07-23 09:33:02 +01:00
ameynert	2112168420	Set BLASTDB_LMDB_MAP_SIZE ... This environment variable needs to be set in order to prevent memory allocation errors in the MAKEBLASTDB process.	2021-07-22 15:07:19 +01:00
ameynert	17fad9dd15	Update pipeline/viralrecon.config ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-07-21 12:27:09 +01:00
ameynert	d9abb7d59f	Added eddie config to viralrecon	2021-07-21 12:23:47 +01:00
ameynert	5224eb5574	Updated resources folder & institute name ... Local resources folder was re-organized & re-named BioinformaticsResources. Added note about viralrecon & atacseq pipeline-specific config. IGMM name-changed recently; updated to IGC.	2021-07-21 12:15:17 +01:00
ameynert	4ceb369af5	eddie.config for viralrecon pipeline	2021-07-21 12:10:43 +01:00
ameynert	0da2c57784	Merge pull request #4 from nf-core/master ... Merge from nf-core/configs	2021-07-21 12:09:32 +01:00
Maxime U. Garcia	47217cae5b	Merge pull request #231 from maxulysse/master_kraken ... Remove kraken profile	2021-07-20 09:29:47 +02:00
Maxime U. Garcia	30e058abf0	Merge branch 'master' into master_kraken	2021-07-20 09:26:56 +02:00
Harshil Patel	836d3c4015	Merge pull request #257 from drpatelh/V1200 ... Add ARTIC v1200 primers to genomes config for viralrecon	2021-07-12 14:03:29 +01:00
Harshil Patel	962dca7a46	Add ARTIC v1200 primers to genomes config for viralrecon	2021-07-12 12:24:49 +01:00
Gisela Gabernet	435955ab20	Merge pull request #256 from ggabernet/master ... Add AWS tower config	2021-07-03 16:54:59 +02:00
ggabernet	e6f1bfaa1a	finally add profile	2021-07-03 15:13:10 +02:00
ggabernet	68e12f85ec	fix cchecker	2021-07-03 15:11:51 +02:00
ggabernet	2a69b90be6	fix cchecker	2021-07-03 15:09:43 +02:00
ggabernet	6475671c38	test that it fails	2021-07-03 14:57:58 +02:00
ggabernet	926f3ba24f	update checker script	2021-07-03 14:52:44 +02:00
ggabernet	79fffbd77f	update changes	2021-07-03 14:39:17 +02:00
ggabernet	f3274c49b5	test profile multiline	2021-07-03 14:36:56 +02:00
Gisela Gabernet	e2088a008d	Merge branch 'master' into master	2021-07-03 12:24:42 +02:00
ggabernet	f8690d49e8	add to tests	2021-07-03 12:21:03 +02:00
ggabernet	ee2e8392ab	add aws_tower profile	2021-07-03 12:17:21 +02:00
Harshil Patel	69f63a006d	Merge pull request #254 from drpatelh/articv4 ... Add ARTIC v4 primers to genomes config for viralrecon	2021-07-01 12:31:02 +01:00
Gisela Gabernet	aae0f0bf07	Merge pull request #255 from ggabernet/master ... update cfc configs	2021-07-01 10:59:25 +02:00
ggabernet	d59d099fe8	remove load module in cfc configs	2021-07-01 10:52:54 +02:00
James A. Fellows Yates	9298b353f5	Merge pull request #253 from jfy133/eva ... eager@EVA fixes more SGE + java silliness	2021-06-29 12:53:34 +02:00
James A. Fellows Yates	5f4b915ae8	Update eva.config	2021-06-29 11:31:00 +02:00
ameynert	85c3f07f3c	Merge pull request #3 from nf-core/master ... Merge in from nf-core/configs	2021-06-25 10:39:18 +01:00
Harshil Patel	93cfc48afd	Add ARTIC v4 primers to genomes config	2021-06-21 21:04:16 +01:00
Edmund Miller	3019035fdb	Merge pull request #252 from Emiller88/utd_sysbio ... Add UTD sysbio	2021-06-17 14:36:30 +00:00
Edmund Miller	cb213a499c	ci: Another missing comma	2021-06-17 09:34:03 -05:00
Edmund Miller	5ad959a436	fix(sysbio): Missing comma	2021-06-17 09:18:45 -05:00
Edmund Miller	f9e4ec4a8d	fix(sysbio): Add sysbio to rnaseq	2021-06-17 09:18:45 -05:00
Edmund Miller	21e1037e0c	docs(sysbio): Add rnaseq specific docs	2021-06-17 09:18:45 -05:00
Edmund Miller	e35c5fd1d8	fix(sysbio): Add nf-core params	2021-06-17 08:32:31 -05:00
Edmund Miller	41ae99d34a	feat(sysbio): Add cleanup	2021-06-17 08:17:55 -05:00
Edmund Miller	87c8e346e0	fix(sysbio): Change filetype	2021-06-17 08:14:48 -05:00
Edmund Miller	14a2106c63	fix(sysbio): Move rnaseq specific things to pipeline config	2021-06-17 08:14:48 -05:00
Edmund Miller	7ff1c6cc7d	ci: Add sysbio	2021-06-16 21:19:49 -05:00
Edmund Miller	2a958f5ce3	docs: Add sysbio	2021-06-16 21:19:38 -05:00
Edmund Miller	472082254a	fix(sysbio): Add Star resources	2021-06-16 21:18:48 -05:00
Edmund Miller	b11f137901	fix(sysbio): Leave igenomes unfinished	2021-06-16 21:18:28 -05:00
Edmund Miller	04d0b27e81	fix(sysbio): Reduce memory on high processes	2021-06-16 21:17:40 -05:00
Edmund Miller	2b58a62a9b	feat(utd): Add initial sysbio config	2021-06-11 14:50:58 -05:00
Gisela Gabernet	9cca0eaf85	Merge pull request #250 from ggabernet/master ... cfc config	2021-06-11 15:05:16 +02:00
ggabernet	c3385593cb	revert cfc config	2021-06-11 14:59:09 +02:00