millironx/nf-configs
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  • 3bfaf65450
         Fixed trailing space ameynert 2021-07-23 09:39:32 +0100
  • 26183d9883
         Updated eddie documentation for singularity cache directory ameynert 2021-07-23 09:35:15 +0100
  • 238d6e5e96
         Added cacheDir to singularity in eddie profile ameynert 2021-07-23 09:33:02 +0100
  • 6ede44b221
         Merge pull request #258 from ameynert/master Harshil Patel 2021-07-22 15:14:54 +0100
  • 2112168420
         Set BLASTDB_LMDB_MAP_SIZE ameynert 2021-07-22 15:07:19 +0100
  • 17fad9dd15
         Update pipeline/viralrecon.config ameynert 2021-07-21 12:27:09 +0100
  • d9abb7d59f
         Added eddie config to viralrecon ameynert 2021-07-21 12:23:47 +0100
  • 5224eb5574
         Updated resources folder & institute name ameynert 2021-07-21 12:15:17 +0100
  • 4ceb369af5
         eddie.config for viralrecon pipeline ameynert 2021-07-21 12:10:43 +0100
  • 0da2c57784
         Merge pull request #4 from nf-core/master ameynert 2021-07-21 12:09:32 +0100
  • 47217cae5b
         Merge pull request #231 from maxulysse/master_kraken Maxime U. Garcia 2021-07-20 09:29:47 +0200
  • 30e058abf0
         Merge branch 'master' into master_kraken Maxime U. Garcia 2021-07-20 09:26:56 +0200
  • 836d3c4015
         Merge pull request #257 from drpatelh/V1200 Harshil Patel 2021-07-12 14:03:29 +0100
  • 962dca7a46 Add ARTIC v1200 primers to genomes config for viralrecon Harshil Patel 2021-07-12 12:24:49 +0100
  • 435955ab20
         Merge pull request #256 from ggabernet/master Gisela Gabernet 2021-07-03 16:54:59 +0200
  • e6f1bfaa1a finally add profile ggabernet 2021-07-03 15:13:10 +0200
  • 68e12f85ec fix cchecker ggabernet 2021-07-03 15:11:51 +0200
  • 2a69b90be6 fix cchecker ggabernet 2021-07-03 15:09:43 +0200
  • 6475671c38 test that it fails ggabernet 2021-07-03 14:57:58 +0200
  • 926f3ba24f update checker script ggabernet 2021-07-03 14:52:44 +0200
  • 79fffbd77f update changes ggabernet 2021-07-03 14:39:17 +0200
  • f3274c49b5 test profile multiline ggabernet 2021-07-03 14:36:56 +0200
  • e2088a008d
         Merge branch 'master' into master Gisela Gabernet 2021-07-03 12:24:42 +0200
  • f8690d49e8 add to tests ggabernet 2021-07-03 12:21:03 +0200
  • ee2e8392ab add aws_tower profile ggabernet 2021-07-03 12:17:21 +0200
  • 69f63a006d
         Merge pull request #254 from drpatelh/articv4 Harshil Patel 2021-07-01 12:31:02 +0100
  • aae0f0bf07
         Merge pull request #255 from ggabernet/master Gisela Gabernet 2021-07-01 10:59:25 +0200
  • d59d099fe8 remove load module in cfc configs ggabernet 2021-07-01 10:52:54 +0200
  • 9298b353f5
         Merge pull request #253 from jfy133/eva James A. Fellows Yates 2021-06-29 12:53:34 +0200
  • 5f4b915ae8
         Update eva.config James A. Fellows Yates 2021-06-29 11:31:00 +0200
  • 85c3f07f3c
         Merge pull request #3 from nf-core/master ameynert 2021-06-25 10:39:18 +0100
  • 93cfc48afd Add ARTIC v4 primers to genomes config Harshil Patel 2021-06-21 21:04:16 +0100
  • 3019035fdb
         Merge pull request #252 from Emiller88/utd_sysbio Edmund Miller 2021-06-17 14:36:30 +0000
  • cb213a499c
         ci: Another missing comma Edmund Miller 2021-06-17 09:34:03 -0500
  • 5ad959a436
         fix(sysbio): Missing comma Edmund Miller 2021-06-17 09:08:27 -0500
  • f9e4ec4a8d
         fix(sysbio): Add sysbio to rnaseq Edmund Miller 2021-06-17 08:50:25 -0500
  • 21e1037e0c
         docs(sysbio): Add rnaseq specific docs Edmund Miller 2021-06-17 08:36:24 -0500
  • e35c5fd1d8
         fix(sysbio): Add nf-core params Edmund Miller 2021-06-17 08:32:31 -0500
  • 41ae99d34a
         feat(sysbio): Add cleanup Edmund Miller 2021-06-17 08:17:18 -0500
  • 87c8e346e0
         fix(sysbio): Change filetype Edmund Miller 2021-06-17 08:13:29 -0500
  • 14a2106c63
         fix(sysbio): Move rnaseq specific things to pipeline config Edmund Miller 2021-06-17 08:06:24 -0500
  • 45213cf6db add note about upcoming upstream fix phue 2021-06-17 11:12:36 +0200
  • 7ff1c6cc7d
         ci: Add sysbio Edmund Miller 2021-06-16 21:19:49 -0500
  • 2a958f5ce3
         docs: Add sysbio Edmund Miller 2021-06-16 21:19:38 -0500
  • 472082254a
         fix(sysbio): Add Star resources Edmund Miller 2021-06-16 21:18:48 -0500
  • b11f137901
         fix(sysbio): Leave igenomes unfinished Edmund Miller 2021-06-16 21:18:28 -0500
  • 04d0b27e81
         fix(sysbio): Reduce memory on high processes Edmund Miller 2021-06-16 21:17:40 -0500
  • f5c36dde3e cbe: send SIGUSR2 upon job termination phue 2021-06-16 16:36:39 +0200
  • 2b58a62a9b
         feat(utd): Add initial sysbio config Edmund Miller 2021-06-11 14:50:58 -0500
  • 9cca0eaf85
         Merge pull request #250 from ggabernet/master Gisela Gabernet 2021-06-11 15:05:16 +0200
  • c3385593cb revert cfc config ggabernet 2021-06-11 14:59:09 +0200
  • 1f45b9c297
         Merge pull request #249 from nf-core/mseybold-patch-1 Gisela Gabernet 2021-06-11 14:42:37 +0200
  • f196de8246
         Update cfc.config mseybold 2021-06-10 12:34:58 +0200
  • 756f067213
         Merge pull request #248 from jfy133/eva James A. Fellows Yates 2021-06-07 13:26:05 +0200
  • da8e002969
         Merge pull request #247 from jfy133/shh-fx James A. Fellows Yates 2021-06-07 10:55:01 +0200
  • fc8b1162c1
         Fix HOPS huamn ref path James A. Fellows Yates 2021-06-07 10:48:35 +0200
  • 5bf57894a5
         Merge pull request #246 from jfy133/shh-update James A. Fellows Yates 2021-06-04 12:32:28 +0200
  • 31d46cb0a9
         Make big_data go by default to medium via run time James A. Fellows Yates 2021-06-04 12:22:54 +0200
  • c75ceec35d
         Merge pull request #244 from oalmelid/master Øyvind Almelid 2021-05-25 10:03:05 +0100
  • f6578f727d Add TMPDIR and mount for it to singularity configuration Øyvind Almelid 2021-05-25 09:54:08 +0100
  • 2ac4693421
         Merge pull request #243 from nf-core/olgabot-patch-1 Olga Botvinnik 2021-05-20 10:34:55 -0700
  • ae114dd142 edit max_time ikeller 2021-05-20 13:52:13 +0200
  • 5a0ecbd81d edit max_time ikeller 2021-05-20 13:48:59 +0200
  • 6def686ab5 edit config ikeller 2021-05-20 13:44:59 +0200
  • 0e3898eabf modify singularity settings ikeller 2021-05-20 10:53:35 +0200
  • 483e24aab6
         Merge pull request #242 from maxulysse/master_munin Maxime U. Garcia 2021-05-20 10:08:32 +0200
  • 05548bdb75 fix: forgotten } MaxUlysse 2021-05-20 09:37:48 +0200
  • 8166e0f606
         executor.cli --> aws.batch.cliPath Olga Botvinnik 2021-05-19 13:36:15 -0700
  • 73fcc4495a feat: update owner of profile MaxUlysse 2021-05-19 20:46:52 +0200
  • 82fadc7061 replaced owner in JAX Asaf Peer 2021-05-19 13:48:49 -0400
  • 9c4830c8d5
         Merge pull request #238 from nf-core/hebbe-config-fix Phil Ewels 2021-05-19 17:46:52 +0200
  • af1e57027d edit config and readme ikeller 2021-05-19 09:46:07 +0200
  • fb3cede5d3 add config file ikeller 2021-05-19 08:41:55 +0200
  • 3bcd55966d
         Update eva.config James A. Fellows Yates 2021-05-05 11:39:33 +0200
  • f2413553a3
         Merge pull request #240 from jfy133/shh James A. Fellows Yates 2021-05-05 10:52:58 +0200
  • a849fe991c
         Add additional retry allowance for silly big data in markdups James A. Fellows Yates 2021-05-04 21:43:19 +0200
  • 77bd7f567f
         Merge pull request #228 from asafpr/master Maxime U. Garcia 2021-05-02 14:47:19 +0200
  • 76b62b478d
         Fix hebbe withName regex Phil Ewels 2021-04-29 23:06:56 +0200
  • 24a4119e43 memory test Barry digby 2021-04-29 14:24:57 +0100
  • aeb0346cce . Barry digby 2021-04-28 20:14:32 +0100
  • 8340e89768 nuig.config first commit Barry digby 2021-04-28 17:28:01 +0100
  • fb40b27eab
         Merge pull request #237 from maxulysse/master_opengraph Phil Ewels 2021-04-26 17:23:08 +0200
  • 867e1aff61 feat: remove social preview image to use GitHub OpenGraph MaxUlysse 2021-04-26 12:41:56 +0200
  • c12c373969
         Merge pull request #235 from aunderwo/cambridge Alexander Peltzer 2021-04-25 10:40:56 +0200
  • d624313abd
         Merge pull request #236 from aunderwo/sanger Alexander Peltzer 2021-04-25 10:40:41 +0200
  • e1b1402f50
         Add Cambridge to README Anthony Underwood 2021-04-24 13:22:54 +0100
  • 5aadc5ec0e
         Add Sanger to README Anthony Underwood 2021-04-24 13:21:19 +0100
  • 9cf19d5246
         Merge pull request #210 from FriederikeHanssen/cfc_sarek FriederikeHanssen 2021-04-23 17:22:01 +0200
  • 4e9e5d2c67
         Merge branch 'master' into cfc_sarek Gisela Gabernet 2021-04-23 16:47:04 +0200
  • b660cb7c09
         Merge pull request #234 from aunderwo/sanger Anthony Underwood 2021-04-22 16:41:33 +0100
  • 982d1a8f2a
         Fix markdown linting Anthony Underwood 2021-04-22 16:41:05 +0100
  • 29dcc160e3
         Create cambridge.md Anthony Underwood 2021-04-22 16:04:29 +0100
  • 8b3951b244
         Create cambridge.config Anthony Underwood 2021-04-22 16:00:37 +0100
  • 3e8f9b3d4e
         Remove blank lines Anthony Underwood 2021-04-22 15:57:09 +0100
  • f414446a88
         Add info on how to load Singularity into your path Anthony Underwood 2021-04-22 15:38:36 +0100
  • b16b011bcc
         Add ~/bin as recommended location for nextflow executable Anthony Underwood 2021-04-22 12:02:11 +0100
  • 351c5773f0
         Add queue limits for 'normal' Anthony Underwood 2021-04-22 11:59:34 +0100
  • fa267c0cf9
         Add sanger to tests Anthony Underwood 2021-04-21 21:01:25 +0100
  • 6175362049
         Add sanger profile Anthony Underwood 2021-04-21 20:47:48 +0100
  • cc18d213dc
         Update sanger.md Anthony Underwood 2021-04-21 20:24:08 +0100