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Author	SHA1	Message	Date
Matthias De Smet	91f9a0711d	Merge pull request #1683 from matthdsm/update/picard ... picard: make reference sequence optional	2022-05-23 20:06:11 +02:00
Sateesh Peri	da0ead705e	Merge branch 'master' into update/picard	2022-05-23 13:38:18 -04:00
FriederikeHanssen	51bd58809d	Merge pull request #1676 from FriederikeHanssen/gatk_filter ... Gatk filtervarianttranches	2022-05-23 15:54:57 +02:00
FriederikeHanssen	754afa9ff3	Merge branch 'master' into gatk_filter	2022-05-23 15:37:44 +02:00
Rike	e34dcdd8bc	add brackets to contains	2022-05-23 13:19:42 +02:00
Rike	dc6ad1bff6	add brackets to contains	2022-05-23 13:07:08 +02:00
Rike	093e3aafdd	contains	2022-05-23 13:04:49 +02:00
Rike	a8de9fd085	test path update	2022-05-23 12:53:36 +02:00
Rike	3af61cfbbc	fix input cardinality for index	2022-05-23 12:26:12 +02:00
Rike	175ea9b7f9	fix version	2022-05-23 12:15:33 +02:00
Rike	a8dac59c50	md5sum not consistent	2022-05-23 12:10:50 +02:00
Rike	2f36a44f61	nf-core create-test-yml	2022-05-23 12:00:31 +02:00
Rike	cd60b4c6eb	add in testdata paths	2022-05-22 13:35:35 +02:00
Rike	5d72500d60	remove variables used for test data generation, add tbi	2022-05-22 13:34:56 +02:00
Rike	520dd06ca3	add new testdata	2022-05-22 13:25:39 +02:00
Matthias De Smet	e13fbf423e	fix tests (again)	2022-05-22 06:54:09 +02:00
Matthias De Smet	cbceee9621	fix tests	2022-05-22 06:51:27 +02:00
Matthias De Smet	3a2de0cf6f	update test for wgsmetrics	2022-05-22 06:49:31 +02:00
Matthias De Smet	c390385cf5	revert wgsmetrics'	2022-05-22 06:44:17 +02:00
Matthias De Smet	4da143ce62	add tests	2022-05-22 06:44:17 +02:00
Matthias De Smet	d6a0238cd1	Merge branch 'master' into update/picard	2022-05-21 08:34:33 +02:00
Matthias De Smet	a5a6973fcf	picard: make reference sequence optional	2022-05-21 08:33:49 +02:00
Mahesh Binzer-Panchal	7a83ca3070	Merge pull request #1682 from mahesh-panchal/mash_screen ... Add mash screen	2022-05-20 16:47:36 +02:00
Mahesh Binzer-Panchal	2926ec0abb	Add mash screen	2022-05-20 13:23:11 +00:00
Rike	bb3e64647b	Merge remote-tracking branch 'origin/master' into gatk_filter	2022-05-18 15:52:47 +02:00
FriederikeHanssen	c8ccfe3710	Merge pull request #1675 from FriederikeHanssen/gatk_cnnscore ... Gatk cnnscore	2022-05-18 15:44:52 +02:00
FriederikeHanssen	44e9cf56fa	Merge branch 'master' into gatk_cnnscore	2022-05-18 15:32:36 +02:00
Rike	11d514cd30	Merge remote-tracking branch 'origin/gatk_cnnscore' into gatk_cnnscore	2022-05-18 14:33:15 +02:00
Rike	e8221cf98e	Merge remote-tracking branch 'origin' into gatk_cnnscore	2022-05-18 14:27:25 +02:00
Rike	10840a0562	Conda not suported	2022-05-18 14:26:21 +02:00
James A. Fellows Yates	9f8d6cbdd5	Merge pull request #1616 from jianhong/motus_profile ... Motus profile	2022-05-18 12:26:31 +01:00
James A. Fellows Yates	965fabdd54	Merge branch 'master' into motus_profile	2022-05-18 11:25:48 +01:00
Rike	5ae757121f	Add indices and meta	2022-05-17 23:38:26 +02:00
FriederikeHanssen	fdf1bec20b	Merge branch 'master' into gatk_cnnscore	2022-05-17 23:07:09 +02:00
Rike	05837a011d	Add comment	2022-05-17 23:06:52 +02:00
Rike	15fba1dd7c	add filter variant tranches	2022-05-17 23:01:24 +02:00
Rike	afa0f2a995	update test	2022-05-17 22:53:41 +02:00
Rike	265fd882ca	update test	2022-05-17 19:44:48 +02:00
Rike	5f63904a50	update test	2022-05-17 19:37:18 +02:00
Rike	05611cf27c	update pytest	2022-05-17 19:11:05 +02:00
Rike	e0fcbb428d	Add CNNScoreVariants	2022-05-17 19:09:46 +02:00
Matthias De Smet	856a8712f8	Merge pull request #1667 from matthdsm/biobambam/bammerge	2022-05-17 17:09:06 +02:00
Jose Espinosa-Carrasco	3614c19206	Merge branch 'master' into biobambam/bammerge	2022-05-17 15:07:37 +02:00
Jose Espinosa-Carrasco	fbf20c1e36	Merge pull request #1673 from nvnieuwk/new-module-bedtools/split ... new module: bedtools split	2022-05-17 14:45:07 +02:00
Nicolas Vannieuwkerke	6342f5b099	added bedtools split	2022-05-17 14:24:32 +02:00
Matthias De Smet	f48790a728	replace regex with fixed extensions	2022-05-17 09:54:06 +02:00
Matthias De Smet	94733a85c0	Update modules/biobambam/bammerge/main.nf ... Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>	2022-05-17 09:46:19 +02:00
Matthias De Smet	c5627e0274	fix config	2022-05-17 09:09:19 +02:00
Matthias De Smet	743e95c61b	fix config	2022-05-17 09:01:02 +02:00
Matthias De Smet	d3ddc2221a	Merge branch 'master' into biobambam/bammerge	2022-05-17 08:26:28 +02:00