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1828 commits

Author SHA1 Message Date
Maxime U. Garcia
3ab5261bdd
Merge branch 'master' into kevbrick-patch-1 2022-06-07 11:58:36 +02:00
Maxime U. Garcia
3eca377514
Merge branch 'master' into gis-branch 2022-06-07 11:58:20 +02:00
Maxime U. Garcia
844d250011
Merge branch 'master' into eva-java-correction 2022-06-07 11:57:05 +02:00
Maxime U. Garcia
5fdc8b7b1b
Merge pull request #381 from maxulysse/master
add fix linting from comment
2022-06-07 11:54:19 +02:00
Maxime U. Garcia
b0f1746abf
Merge branch 'master' into master 2022-06-07 11:42:50 +02:00
James A. Fellows Yates
515cbf0a77
Merge pull request #385 from nvnieuwk/fix-for-failing-tests-vsc-ugent-profile
Fix for failing tests for vsc_ugent
2022-06-07 11:41:00 +02:00
Nicolas Vannieuwkerke
44e25830e4 update for vsc_ugent 2022-06-07 11:33:22 +02:00
James A. Fellows Yates
46fba9c597
Update eva.config 2022-06-03 21:10:48 +02:00
James A. Fellows Yates
05cc8a08f1
Update eva.config 2022-06-03 21:08:19 +02:00
Maxime U. Garcia
4587fc4215
Merge pull request #379 from nf-core/config_ucph-mjolnir_ash
custom config mjolnir_globe
2022-06-03 17:28:57 +02:00
Åshild J. Vågene
ed526530d2
Rename mjolnir_globe to mjolnir_globe.config 2022-06-03 17:15:12 +02:00
Åshild J. Vågene
34feaa8b6b
prettier output 2022-06-03 17:08:15 +02:00
Åshild J. Vågene
2d82218318
typo 2022-06-03 16:42:08 +02:00
MaxUlysse
5a04f62681 add fix linting from comment 2022-06-03 15:57:24 +02:00
Åshild J. Vågene
144ca851c1
Update mjolnir_globe.md 2022-06-03 15:36:19 +02:00
Åshild J. Vågene
22ed36a73d
cacheDir update 2022-06-03 15:33:58 +02:00
James Fellows Yates
9ef52af084 Increase overhead 2022-06-03 14:24:27 +02:00
James Fellows Yates
c40ebb9acf Add overhead for get_software_versions 2022-06-03 14:21:41 +02:00
James Fellows Yates
df0429ce9d Replace oracle specific _JAVA_OPTIONS to portable JAVA_TOOLS_OPTIONS 2022-06-03 14:20:39 +02:00
Phil Ewels
b51059a3ae
Merge branch 'master' into config_ucph-mjolnir_ash 2022-06-03 13:21:36 +02:00
Phil Ewels
b38a0077c2
Merge branch 'master' into gis-branch 2022-06-03 13:20:45 +02:00
Phil Ewels
3b338828d5
Merge branch 'master' into kevbrick-patch-1 2022-06-03 13:20:09 +02:00
James A. Fellows Yates
7353fb257d
Merge pull request #380 from jfy133/taxprofiler
Add MAG @ EVA profile
2022-06-03 12:54:47 +02:00
James A. Fellows Yates
24e165c52d
Update pipeline/mag.config 2022-06-03 12:51:47 +02:00
James A. Fellows Yates
97d57539e3
Apply suggestions from code review
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
2022-06-03 12:51:20 +02:00
James Fellows Yates
5a67eba04c Add MAG @ EVA profile 2022-06-03 12:41:08 +02:00
Åshild J. Vågene
1d23ba9264
change name of tmp dir to .tmp_nfcore 2022-06-02 16:40:29 +02:00
Åshild J. Vågene
2b67d3aaab
Update main.yml 2022-06-02 16:30:35 +02:00
Åshild J. Vågene
62dfda8103
add mjolnir_globe md 2022-06-02 16:07:47 +02:00
Åshild J. Vågene
7a63e0a2ec
mjolnir_globe config added 2022-06-02 16:05:28 +02:00
Åshild J. Vågene
0f6fb0c10d
Update mjolnir_globe.md 2022-06-02 16:00:22 +02:00
Åshild J. Vågene
e871dc87f9
Update mjolnir_globe.md 2022-06-02 15:59:11 +02:00
Åshild J. Vågene
940077190b
Update mjolnir_globe.md 2022-06-02 15:38:40 +02:00
Åshild J. Vågene
2988e33576
Create mjolnir_globe.md 2022-06-02 15:38:07 +02:00
Åshild J. Vågene
9b9a6f0188
Update and rename holo_globe to mjolnir_globe 2022-06-02 15:09:52 +02:00
Åshild J. Vågene
6d9cc91c5f
Update holo_globe 2022-06-02 15:03:47 +02:00
Åshild J. Vågene
64fe4677b1
Update holo_globe 2022-05-31 15:26:23 +02:00
Åshild J. Vågene
0b51552e88
Update holo_globe 2022-05-31 15:23:43 +02:00
Emil Bertilsson
80e2a50a2f
Merge pull request #378 from raysloks/feat/hasta_java_memory_fix
Feat/hasta java memory fix
2022-05-30 14:40:52 +02:00
Emil
8453f6b41a Moves qualimap arg to pipeline-specific config 2022-05-30 12:58:12 +02:00
Emil
29fa08c434 Adds _JAVA_OPTIONS to singularity whitelist 2022-05-30 11:07:24 +02:00
Emil
19497a4183 Makes qualimap fix work for most memory amounts 2022-05-30 11:06:48 +02:00
Åshild J. Vågene
bb25c77e7c
Update holo_globe 2022-05-20 17:01:30 +02:00
Åshild J. Vågene
d3e5c79fb4
Create holo_globe 2022-05-20 15:44:20 +02:00
Phil Ewels
123706519e
Merge pull request #377 from nvnieuwk/vsc_ugent
Typo in VSC UGent markdown
2022-05-20 10:55:39 +02:00
nvnieuwk
15e03bcc7b
Merge branch 'nf-core:master' into vsc_ugent 2022-05-20 10:36:51 +02:00
Nicolas Vannieuwkerke
867dcabd97 Fix type in VSC UGent 2022-05-20 10:36:07 +02:00
nvnieuwk
817f1a4aa7
Merge pull request #376 from nvnieuwk/vsc_ugent
Added the VSC UGent profile
2022-05-20 10:29:50 +02:00
Nicolas Vannieuwkerke
8432e4d1dc typo 2022-05-20 09:49:42 +02:00
Nicolas Vannieuwkerke
fa39478a2d prettier 2022-05-20 09:49:04 +02:00