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Author SHA1 Message Date
ameynert
96fe6185a0
IGMM-specific docs 2021-03-24 11:01:41 +00:00
ameyner2
00d984d918 Merge branch 'master' of github.com:ameynert/configs 2021-03-24 10:46:43 +00:00
ameyner2
da8cf2f207 Added pipeline-specific config files for rnaseq and sarek 2021-03-24 10:46:26 +00:00
ameynert
791f3c95f3
Pipeline specific configs moving to confs/pipeline 2021-03-23 16:07:07 +00:00
ameynert
b48136a62e
Added pipeline-specific config files 2021-03-18 12:55:03 +00:00
ameynert
af6a6b1060
Details on running on eddie 
Removed Conda support, Singularity by default. Added login and screen session on wild west node options.
 2021-03-18 12:48:48 +00:00
ameyner2
bb388fb88b Merge branch 'master' of github.com:ameynert/configs 2021-03-18 12:32:11 +00:00
ameyner2
059d353a1e Removed Conda, added automount Singularity 2021-03-18 12:31:56 +00:00
ameynert
4ad6bb2bec
Singularity info 2021-03-17 14:50:40 +00:00
ameyner2
d4cd07c646 Typo in beforescript 2021-03-17 09:21:26 +00:00
ameyner2
cfe13fe6c1 Fixed typo & added singularity tmpdir 2021-03-15 15:42:30 +00:00
ameynert
bc961c7990
Merge pull request #1 from ggrimes/patch-1 
changed # to // for comments
 2021-03-04 19:48:45 +00:00
Graeme Grimes
babeccd020
changed # to // for comments 2021-03-04 16:45:21 +00:00
ameynert
4c0111f598
Eddie profile documentation initial commit 2021-03-04 14:46:58 +00:00
ameynert
6f09a233f0
Added singularity module 2021-03-04 14:46:23 +00:00
ameynert
3af2c6409f
Initial commit of eddie.config 2021-03-03 09:59:16 +00:00
ameynert
11e2083fb1
Added eddie profile to nfcore_custom.config list 2021-03-03 09:57:34 +00:00
Alexander Peltzer
bb8e82e9c7
Merge pull request #208 from maxibor/master 
Update shh config after CDAG departure
 2021-02-17 10:41:13 +01:00
maxibor
286e18b80c update shh config after CDAG departure 2021-02-17 10:22:05 +01:00
Harshil Patel
d457699de1
Merge pull request #207 from drpatelh/primers 
Update links to be consistent for viralrecon genomes raw URLs
 2021-02-16 13:25:20 +00:00
drpatelh
01a4f8559e Update links to be consistent 2021-02-16 13:17:16 +00:00
Harshil Patel
6ffaf922c5
Update genomes.config 2021-02-16 10:28:32 +00:00
Alexander Peltzer
a4630a926d
Merge pull request #206 from marchoeppner/ccga_dx_update 
Updating the CCGA DX profile to new storage system
 2021-02-16 09:46:54 +01:00
Marc Hoeppner
1f2fce00aa Updating the CCGA DX profile to new storage system 2021-02-16 09:02:16 +01:00
Harshil Patel
4de0855218
Update genomes.config 2021-02-15 18:48:03 +00:00
Harshil Patel
76750ad59b
Merge pull request #205 from drpatelh/primers 
Add ARTIC primer sets to genome config
 2021-02-15 17:16:13 +00:00
drpatelh
9d500cf679 Reorder params 2021-02-15 17:02:26 +00:00
drpatelh
f283dfb2dc Add ARTIC primer sets to genome config 2021-02-15 16:58:30 +00:00
James A. Fellows Yates
86566ddd3b
Merge pull request #204 from jfy133/master 
Add a 'big_data' profile for eager @ SHH
 2021-02-04 15:07:52 +01:00
James A. Fellows Yates
e32f1e46ff
Update shh.config 2021-02-04 08:13:16 +01:00
James A. Fellows Yates
c515a401c7
Update shh.config 2021-02-04 08:06:35 +01:00
James A. Fellows Yates
82fe8a04be
Update shh.config 2021-02-04 08:02:33 +01:00
James A. Fellows Yates
e7ac0bae13
Update shh.config 2021-02-04 08:00:57 +01:00
James A. Fellows Yates
eb725f9ea3
Update shh.config 2021-02-03 20:13:09 +01:00
Alexander Peltzer
95791b04a4
Merge pull request #203 from oist/draftOISTconfig 
Institutional profile for the Okinawa Institute of Science and Technology (OIST)
 2021-02-02 14:07:03 +01:00
Charles Plessy
1608b36dcf Institutional profile for Okinawa Institute of Science and Technology 2021-02-02 17:40:10 +09:00
Thiseas C. Lamnidis
c33cedf4ed
Merge pull request #202 from nf-core/TCLamnidis-patch-1 
Add debug profile
 2021-01-26 15:20:56 +01:00
Thiseas C. Lamnidis
713a032a36
Add debug profile 
which deactivates cleanup of workdir after successful run
 2021-01-26 15:08:21 +01:00
James A. Fellows Yates
5ba1b01c0c
Merge pull request #200 from nf-core/ceh-config 
Seg_globe config
 2021-01-21 13:24:26 +01:00
James A. Fellows Yates
26d164ca74
Remove ceh profile for now 2021-01-21 13:15:08 +01:00
James A. Fellows Yates
c4604450d8
Update seg_globe.md 2021-01-21 13:04:12 +01:00
James A. Fellows Yates
7cffcf809b
Update main.yml 2021-01-21 12:50:14 +01:00
Åshild J. Vågene
765a2e0b7e
Update README.md 2021-01-21 11:55:00 +01:00
Åshild J. Vågene
8037b73ddd
Update nfcore_custom.config 2021-01-21 11:52:58 +01:00
Åshild J. Vågene
bcd137225e
Update and rename ceh.md to seg_globe.md 2021-01-21 11:46:46 +01:00
Åshild J. Vågene
594985f1ee
Update and rename ceh.config to seg_globe.config 2021-01-21 11:43:34 +01:00
Åshild J. Vågene
ef80452577
Update docs/ceh.md 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2021-01-21 11:16:46 +01:00
Åshild J. Vågene
8fa720b9cc
Update conf/ceh.config 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2021-01-21 11:15:06 +01:00
James A. Fellows Yates
2fd475c339
Fix some linting errors 2021-01-21 06:30:43 +01:00
James A. Fellows Yates
964cae4ac7
Add CEH to CI 2021-01-21 06:22:37 +01:00