Øyvind Almelid
|
f6578f727d
|
Add TMPDIR and mount for it to singularity configuration
|
2021-05-25 09:54:08 +01:00 |
|
ameynert
|
0ab9edde72
|
Delete conf/pipeline/atacseq directory
Pipeline-specific config not supported yet by ATAC-seq pipeline
|
2021-04-07 09:24:30 +01:00 |
|
ameynert
|
6e201a71f4
|
ATAC-seq pipeline config
Java processes with overhead memory requirements
|
2021-03-30 16:31:00 +01:00 |
|
ameynert
|
e5f2a63079
|
Java overhead processes list updated
Added all processes calling GATK for Mutect2 variant calling
|
2021-03-30 16:21:53 +01:00 |
|
ameynert
|
adfb5366b9
|
Java overhead process list updated
Added HaplotypeCaller and GenotypeGVCFs to set of processes that need Java overhead
|
2021-03-30 16:15:17 +01:00 |
|
Gisela Gabernet
|
71a97ba316
|
Merge pull request #185 from ggabernet/master
awsbatch config update
|
2021-03-28 20:59:40 +02:00 |
|
Alexander Peltzer
|
26b5904df1
|
Merge pull request #218 from asafpr/master
added jax singularity cache dir
|
2021-03-24 17:39:03 +01:00 |
|
Asaf Peer
|
922ab87eb0
|
added jax singularity cache dir
|
2021-03-24 11:25:47 -04:00 |
|
Phil Ewels
|
bfab371c94
|
Merge branch 'master' into master
|
2021-03-24 12:36:15 +01:00 |
|
ameyner2
|
da8cf2f207
|
Added pipeline-specific config files for rnaseq and sarek
|
2021-03-24 10:46:26 +00:00 |
|
Asaf Peer
|
9b2d5bfead
|
Merge pull request #216 from asafpr/master
Added JAX conf
|
2021-03-24 03:31:14 -04:00 |
|
Alexander Peltzer
|
5988c51361
|
Merge pull request #211 from DoaneAS/master
Adding WCM.config for Weill Cornell Medicine cluster
|
2021-03-23 14:58:27 +01:00 |
|
Edmund Miller
|
a6975cdd4e
|
fix(ganymede): large => high
Co-authored-by: drpatelh <drpatelh@users.noreply.github.com>
|
2021-03-22 12:42:56 -05:00 |
|
Edmund Miller
|
34ccce9531
|
fix(ganymede): Add process resources
Trimgalore though it can be a bottom neck, doesn't require the 1 big
memory node we have and can be run on the genomics queue.
|
2021-03-21 21:47:59 -05:00 |
|
Edmund Miller
|
4570718b12
|
fix(ganymede): Add TMPDIR and SINGULARITY_CACHEDIR env variables
|
2021-03-21 21:45:39 -05:00 |
|
Asaf Peer
|
30c864e112
|
added JAX conf
|
2021-03-21 06:49:11 -04:00 |
|
ameyner2
|
059d353a1e
|
Removed Conda, added automount Singularity
|
2021-03-18 12:31:56 +00:00 |
|
ameyner2
|
d4cd07c646
|
Typo in beforescript
|
2021-03-17 09:21:26 +00:00 |
|
Noirot Céline
|
7e9f83ee81
|
Add IFB config
|
2021-03-16 15:54:19 +01:00 |
|
ameyner2
|
cfe13fe6c1
|
Fixed typo & added singularity tmpdir
|
2021-03-15 15:42:30 +00:00 |
|
Ashley S Doane
|
e7f8189dfc
|
Create wcm.config
|
2021-03-11 13:52:11 -05:00 |
|
phue
|
da3bd2693d
|
cbe: add rapid qos
and update config url
|
2021-03-10 11:26:01 +01:00 |
|
Graeme Grimes
|
babeccd020
|
changed # to // for comments
|
2021-03-04 16:45:21 +00:00 |
|
ameynert
|
6f09a233f0
|
Added singularity module
|
2021-03-04 14:46:23 +00:00 |
|
ameynert
|
3af2c6409f
|
Initial commit of eddie.config
|
2021-03-03 09:59:16 +00:00 |
|
maxibor
|
286e18b80c
|
update shh config after CDAG departure
|
2021-02-17 10:22:05 +01:00 |
|
drpatelh
|
01a4f8559e
|
Update links to be consistent
|
2021-02-16 13:17:16 +00:00 |
|
Harshil Patel
|
6ffaf922c5
|
Update genomes.config
|
2021-02-16 10:28:32 +00:00 |
|
Marc Hoeppner
|
1f2fce00aa
|
Updating the CCGA DX profile to new storage system
|
2021-02-16 09:02:16 +01:00 |
|
Harshil Patel
|
4de0855218
|
Update genomes.config
|
2021-02-15 18:48:03 +00:00 |
|
drpatelh
|
9d500cf679
|
Reorder params
|
2021-02-15 17:02:26 +00:00 |
|
drpatelh
|
f283dfb2dc
|
Add ARTIC primer sets to genome config
|
2021-02-15 16:58:30 +00:00 |
|
ggabernet
|
9b5bcbd434
|
update aws clipath
|
2021-02-09 22:06:59 +01:00 |
|
ggabernet
|
0909708b97
|
update with upstream
|
2021-02-09 22:01:27 +01:00 |
|
James A. Fellows Yates
|
86566ddd3b
|
Merge pull request #204 from jfy133/master
Add a 'big_data' profile for eager @ SHH
|
2021-02-04 15:07:52 +01:00 |
|
James A. Fellows Yates
|
e32f1e46ff
|
Update shh.config
|
2021-02-04 08:13:16 +01:00 |
|
James A. Fellows Yates
|
c515a401c7
|
Update shh.config
|
2021-02-04 08:06:35 +01:00 |
|
James A. Fellows Yates
|
82fe8a04be
|
Update shh.config
|
2021-02-04 08:02:33 +01:00 |
|
James A. Fellows Yates
|
e7ac0bae13
|
Update shh.config
|
2021-02-04 08:00:57 +01:00 |
|
James A. Fellows Yates
|
eb725f9ea3
|
Update shh.config
|
2021-02-03 20:13:09 +01:00 |
|
Charles Plessy
|
1608b36dcf
|
Institutional profile for Okinawa Institute of Science and Technology
|
2021-02-02 17:40:10 +09:00 |
|
Thiseas C. Lamnidis
|
713a032a36
|
Add debug profile
which deactivates cleanup of workdir after successful run
|
2021-01-26 15:08:21 +01:00 |
|
James A. Fellows Yates
|
26d164ca74
|
Remove ceh profile for now
|
2021-01-21 13:15:08 +01:00 |
|
Åshild J. Vågene
|
594985f1ee
|
Update and rename ceh.config to seg_globe.config
|
2021-01-21 11:43:34 +01:00 |
|
Åshild J. Vågene
|
8fa720b9cc
|
Update conf/ceh.config
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2021-01-21 11:15:06 +01:00 |
|
Åshild J. Vågene
|
f8973f153a
|
Update ceh.config
|
2021-01-21 00:31:49 +01:00 |
|
Åshild J. Vågene
|
91594dffea
|
Update ceh.config
|
2021-01-21 00:29:43 +01:00 |
|
Åshild J. Vågene
|
c11c26f15f
|
Create ceh.config
|
2021-01-20 23:45:26 +01:00 |
|
James A. Fellows Yates
|
1c25cb033b
|
Add big_data profile
|
2021-01-19 13:53:01 +01:00 |
|
rbpisupati
|
9b5ac5c89d
|
added anaconda module for cbe
|
2021-01-15 12:55:46 +01:00 |
|