JIANHONG OU
|
a2dbef3de3
|
remove the wrong quotes for motus_profile.
|
2022-05-11 17:49:12 -04:00 |
|
JIANHONG OU
|
aca4b48842
|
Merge branch 'motus_profile' of github.com:jianhong/modules into motus_profile
|
2022-05-11 14:23:25 -04:00 |
|
JIANHONG OU
|
ae81311a78
|
fix the typo when using getExtension for motus_profile.
|
2022-05-11 14:23:09 -04:00 |
|
Matthias De Smet
|
dcf9c07fc9
|
Merge branch 'master' into update/bowtie2-align
|
2022-05-11 19:08:23 +02:00 |
|
Moritz E. Beber
|
b2dbaa9930
|
refactor: rename module
|
2022-05-11 17:33:45 +02:00 |
|
Moritz E. Beber
|
23091aabda
|
refactor: move files to custom section
|
2022-05-11 17:33:45 +02:00 |
|
Moritz E. Beber
|
e4551a9ab3
|
refactor: always output settings
|
2022-05-11 17:33:45 +02:00 |
|
Moritz E. Beber
|
64ff23f3c1
|
feat: add module that verifies NCBI settings
|
2022-05-11 17:33:45 +02:00 |
|
Mahesh Binzer-Panchal
|
0199d0efd2
|
Merge branch 'master' into kat_hist
|
2022-05-11 16:56:29 +02:00 |
|
Matthias De Smet
|
c8d3de2ad9
|
restore samtools cmd to defaults
|
2022-05-11 16:17:30 +02:00 |
|
Jasmin F
|
853e3ec087
|
Remove commented code
Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
|
2022-05-11 15:56:10 +02:00 |
|
Matthias De Smet
|
bcd7fe55b1
|
Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2022-05-11 13:59:03 +02:00 |
|
Matthias De Smet
|
9097abf277
|
Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2022-05-11 13:58:58 +02:00 |
|
Matthias De Smet
|
971a889e2a
|
Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2022-05-11 13:57:27 +02:00 |
|
Matthias De Smet
|
b456d8fa0a
|
Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2022-05-11 13:57:19 +02:00 |
|
Matthias De Smet
|
ff4b297827
|
Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2022-05-11 13:57:11 +02:00 |
|
Matthias De Smet
|
9dd083fa94
|
Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-11 13:55:55 +02:00 |
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Matthias De Smet
|
dcffd93875
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Merge branch 'master' into update/bowtie2-align
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2022-05-11 13:34:24 +02:00 |
|
CMGG ICT Team
|
3ae8cbfad7
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bowtie2: remove code duplication
|
2022-05-11 13:32:56 +02:00 |
|
Moritz E. Beber
|
0cdf7767a7
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refactor: require NCBI user settings always
|
2022-05-11 13:02:52 +02:00 |
|
Moritz E. Beber
|
d4f13ebfff
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refactor: create new settings input
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2022-05-11 12:47:54 +02:00 |
|
Moritz E. Beber
|
5d593bdb45
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docs: correct license and input description
|
2022-05-11 12:47:54 +02:00 |
|
Mahesh Binzer-Panchal
|
fd579ebbb3
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Merge branch 'master' into kat_hist
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2022-05-11 12:43:11 +02:00 |
|
Mahesh Binzer-Panchal
|
00fcdd0cba
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Merge branch 'master' into genomescope2
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2022-05-11 12:42:39 +02:00 |
|
Mahesh Binzer-Panchal
|
d54cf467f4
|
Update outputs and test data set
|
2022-05-11 10:42:17 +00:00 |
|
Harshil Patel
|
7be7f404d5
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Merge branch 'master' into refactor-prefetch
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2022-05-11 11:28:02 +01:00 |
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jasmezz
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5d76f1c7ff
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Add fasta/gff input option
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2022-05-11 12:06:02 +02:00 |
|
Jasmin F
|
9cce4a00b2
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Merge branch 'nf-core:master' into antismashlite
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2022-05-11 12:03:30 +02:00 |
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Mahesh Binzer-Panchal
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0774704038
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Merge branch 'master' into genomescope2
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2022-05-11 11:38:36 +02:00 |
|
Mahesh Binzer-Panchal
|
cd32c7f744
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Merge branch 'master' into kat_hist
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2022-05-10 17:03:00 +02:00 |
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Mahesh Binzer-Panchal
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b875cfb744
|
Merge branch 'master' into kat_hist
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2022-05-10 14:36:18 +02:00 |
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Praveen Raj S
|
237971cd15
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Merge branch 'master' into master
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2022-05-10 14:35:41 +02:00 |
|
Nicolas Vannieuwkerke
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fa7c947c35
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Adjusted meta
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2022-05-10 13:33:37 +02:00 |
|
Nicolas Vannieuwkerke
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b7134855e4
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Small update on the output channels
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2022-05-10 12:34:52 +02:00 |
|
Moritz E. Beber
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1b228835e9
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refactor: require settings input always
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2022-05-10 12:29:42 +02:00 |
|
Nicolas Vannieuwkerke
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c18391aa49
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Updated meta.yml
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2022-05-10 12:26:13 +02:00 |
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nvnieuwk
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2eb77bd64e
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Update modules/rtgtools/vcfeval/main.nf
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-10 12:22:56 +02:00 |
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nvnieuwk
|
29f2d3c284
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Update modules/rtgtools/vcfeval/main.nf
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-10 12:22:49 +02:00 |
|
Nicolas Vannieuwkerke
|
ef4857ec54
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Updated meta.yml
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2022-05-10 12:20:01 +02:00 |
|
Moritz E. Beber
|
09bfe3c618
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Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2022-05-10 12:16:57 +02:00 |
|
Moritz E. Beber
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b1e134fdd7
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docs: describe new file input
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2022-05-10 12:16:57 +02:00 |
|
Moritz E. Beber
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f6936e5270
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refactor: accept settings as input
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2022-05-10 12:16:57 +02:00 |
|
Moritz E. Beber
|
46a9aabfa3
|
chore: improve license description
|
2022-05-10 12:16:57 +02:00 |
|
Nicolas Vannieuwkerke
|
f3d5584ab0
|
Linting
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2022-05-10 12:08:23 +02:00 |
|
Nicolas Vannieuwkerke
|
5db26f9f35
|
Linting
|
2022-05-10 12:07:11 +02:00 |
|
Nicolas Vannieuwkerke
|
3a064b0a99
|
Split the output to different channels
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2022-05-10 12:05:42 +02:00 |
|
Nicolas Vannieuwkerke
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e5d091ad4b
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Merge branch 'new-module-rtg/vcfeval' of github.com:nvnieuwk/modules into new-module-rtg/vcfeval
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2022-05-10 09:35:44 +02:00 |
|
Nicolas Vannieuwkerke
|
c69d5cc23e
|
Added evaluation-regions and adjusted the output to now contain all output (and not only the summary)
|
2022-05-10 09:35:42 +02:00 |
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nvnieuwk
|
95103fbd79
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-10 09:06:34 +02:00 |
|
Praveen Raj S
|
459a2d1759
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Merge branch 'master' into master
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2022-05-09 22:16:59 +02:00 |
|
Mahesh Binzer-Panchal
|
f65d896f57
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create genomescope2 module
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2022-05-09 15:09:15 +00:00 |
|
Mahesh Binzer-Panchal
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705ad7c3a1
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Merge branch 'master' into meryl_unionsum
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2022-05-09 16:20:01 +02:00 |
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nvnieuwk
|
aceb5220cf
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-09 16:18:00 +02:00 |
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Mahesh Binzer-Panchal
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83a266ea70
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Merge branch 'master' into meryl_unionsum
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2022-05-09 16:16:08 +02:00 |
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FriederikeHanssen
|
adc4ff868c
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Merge branch 'master' into samtools_convert
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2022-05-09 16:15:24 +02:00 |
|
Rike
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da79396f06
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rename aligned to alignment
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2022-05-09 16:07:49 +02:00 |
|
Rike
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5bd456e5e8
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rename file_type to output extension
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2022-05-09 16:06:22 +02:00 |
|
Rike
|
1de1c2253e
|
Combine output after code review
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2022-05-09 16:04:58 +02:00 |
|
Nicolas Vannieuwkerke
|
bd7e1414a4
|
Fixed meta.yml
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2022-05-09 15:55:48 +02:00 |
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nvnieuwk
|
4b8bd9ebf9
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-09 15:51:31 +02:00 |
|
Nicolas Vannieuwkerke
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1b63d03f8e
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adjusted the bed variable name
|
2022-05-09 15:51:19 +02:00 |
|
Nicolas Vannieuwkerke
|
f6262b4a10
|
fixed some issues
|
2022-05-09 15:47:07 +02:00 |
|
Rike
|
24d5e7feed
|
Code review suggestions
|
2022-05-09 15:42:55 +02:00 |
|
Mahesh Binzer-Panchal
|
8d86988632
|
Merge branch 'master' into meryl/histogram
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2022-05-09 15:39:32 +02:00 |
|
Rike
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ef5f145342
|
Generalize Bam2Cram do either conversion
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2022-05-09 15:22:54 +02:00 |
|
Mahesh Binzer-Panchal
|
57fee2b3d6
|
Add description pattern
|
2022-05-09 12:56:22 +00:00 |
|
Annick Renevey
|
bf91f9dd9b
|
update arriba module
|
2022-05-09 14:55:59 +02:00 |
|
Mahesh Binzer-Panchal
|
6621768550
|
Update pytest outputs
|
2022-05-09 12:54:31 +00:00 |
|
Mahesh Binzer-Panchal
|
ce97c87b5d
|
Merge branch 'master' into meryl_unionsum
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2022-05-09 13:51:55 +02:00 |
|
Mahesh Binzer-Panchal
|
7a5d5f5766
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Merge branch 'master' into kat_hist
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2022-05-09 13:18:18 +02:00 |
|
Mahesh Binzer-Panchal
|
a43bc940d6
|
Add suggestions from code review
|
2022-05-09 11:15:14 +00:00 |
|
Mahesh Binzer-Panchal
|
129f57ccd9
|
Add meryl histogram
|
2022-05-09 08:50:28 +00:00 |
|
Mahesh Binzer-Panchal
|
ad4f8389cb
|
Add meryl unionsum
|
2022-05-09 08:33:21 +00:00 |
|
Mahesh Binzer-Panchal
|
32b0fdc9d9
|
Merge branch 'master' into meryl_count
|
2022-05-09 10:05:28 +02:00 |
|
Mahesh Binzer-Panchal
|
4591ea2205
|
atomize
|
2022-05-09 07:58:58 +00:00 |
|
Matthias De Smet
|
2b91985aa0
|
Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-09 09:43:48 +02:00 |
|
Nicolas Vannieuwkerke
|
d18af7358a
|
Moved untarring the genome sdf folder to the test itself
|
2022-05-09 09:20:42 +02:00 |
|
James A. Fellows Yates
|
8a83ad0518
|
Merge branch 'master' into motus_profile
|
2022-05-09 08:16:16 +02:00 |
|
nvnieuwk
|
6fd9246aef
|
Update modules/rtgtools/vcfeval/main.nf
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
|
2022-05-09 08:07:33 +02:00 |
|
JIANHONG OU
|
b2542ee079
|
remove the mgc in metadata for motus_profile.
|
2022-05-08 06:21:26 -04:00 |
|
Harshil Patel
|
2676f8eef4
|
Merge branch 'master' into fix-prefetch
|
2022-05-06 19:33:44 +01:00 |
|
Matthias De Smet
|
0752b82c9f
|
Merge branch 'master' into update/snapaligner
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2022-05-06 18:57:37 +02:00 |
|
Moritz E. Beber
|
ea41c753c0
|
fix: remove retry label
Call gets retried by bash script
|
2022-05-06 17:28:56 +02:00 |
|
Moritz E. Beber
|
dd1c66783a
|
refactor: use a template to add retrying
|
2022-05-06 17:26:41 +02:00 |
|
Moritz E. Beber
|
ed09978222
|
chore: update build number
|
2022-05-06 17:26:41 +02:00 |
|
Mahesh Binzer-Panchal
|
67481c6d54
|
Start Meryl count
|
2022-05-06 15:04:04 +00:00 |
|
Mahesh Binzer-Panchal
|
1e55ad987f
|
Merge branch 'master' into kat_hist
|
2022-05-06 16:35:51 +02:00 |
|
Nicolas Vannieuwkerke
|
eb8688d2b8
|
Merge branch 'new-module-rtg/vcfeval' of github.com:nvnieuwk/modules into new-module-rtg/vcfeval
|
2022-05-06 16:21:35 +02:00 |
|
Nicolas Vannieuwkerke
|
e271410017
|
Removed some whitespaces
|
2022-05-06 16:21:32 +02:00 |
|
nvnieuwk
|
5153e10840
|
Merge branch 'master' into new-module-rtg/vcfeval
|
2022-05-06 16:19:17 +02:00 |
|
JIANHONG OU
|
9b50036e9b
|
add test_bam and -m parameter for motus_profile
|
2022-05-06 08:56:42 -04:00 |
|
JIANHONG OU
|
c301a406dd
|
Merge branch 'nf-core:master' into motus_profile
|
2022-05-06 08:33:43 -04:00 |
|
Nicolas Vannieuwkerke
|
84b354ab6a
|
Added the rtgtools/vcfeval module
|
2022-05-06 14:23:40 +02:00 |
|
JIANHONG OU
|
3499314b96
|
Update modules/motus/profile/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-06 08:19:47 -04:00 |
|
JIANHONG OU
|
4df57b03bd
|
Update modules/motus/profile/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-06 08:11:58 -04:00 |
|
JIANHONG OU
|
6b2f16a0f4
|
Update modules/motus/profile/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-06 08:11:39 -04:00 |
|
JIANHONG OU
|
baeb2bd1c1
|
Update modules/motus/profile/main.nf
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-06 08:11:29 -04:00 |
|
JIANHONG OU
|
4497eb1734
|
Update modules/motus/profile/main.nf
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-06 08:11:22 -04:00 |
|
Matthias De Smet
|
3930ba227b
|
merge snapaligner modes into one
|
2022-05-06 14:10:44 +02:00 |
|
Mahesh Binzer-Panchal
|
9fa6b6c1fc
|
Update meta.yml
|
2022-05-06 11:56:43 +00:00 |
|
Mahesh Binzer-Panchal
|
a9f23bb477
|
Merge branch 'master' into busco
|
2022-05-06 13:49:01 +02:00 |
|
Mahesh Binzer-Panchal
|
35c5828f43
|
Add --auto-lineage option and remove single_end
Co-authored-by: Jill V. Hagey, PhD <jvhagey@gmail.com>
|
2022-05-06 11:48:21 +00:00 |
|
Jose Espinosa-Carrasco
|
035655e35d
|
Merge branch 'master' into modules/md5sum
|
2022-05-06 12:34:14 +02:00 |
|
Ramprasad Neethiraj
|
e639b1e455
|
Merge branch 'master' into feat/update_cnvpytor
|
2022-05-06 12:03:12 +02:00 |
|
Matthias De Smet
|
bd1b80f36e
|
fix software definitions
|
2022-05-06 11:07:05 +02:00 |
|
Ramprasad Neethiraj
|
1ccea5ff4d
|
remove prefix def in callcnvs
|
2022-05-06 10:56:58 +02:00 |
|
Matthias De Smet
|
1c7205d683
|
fixed container definitions
|
2022-05-06 10:44:51 +02:00 |
|
Matthias De Smet
|
77d825e043
|
fix copy paste errors
|
2022-05-06 10:39:13 +02:00 |
|
Matthias De Smet
|
09e729ad41
|
added sha256sum
|
2022-05-06 10:28:14 +02:00 |
|
Mahesh Binzer-Panchal
|
d83281eac9
|
Merge branch 'master' into kat_hist
|
2022-05-06 10:02:44 +02:00 |
|
Mahesh Binzer-Panchal
|
9194fb845e
|
Add module kat hist
|
2022-05-06 07:54:10 +00:00 |
|
Matthias De Smet
|
853b623969
|
new module: md5sum
|
2022-05-06 09:20:40 +02:00 |
|
Ramprasad Neethiraj
|
313d76e005
|
update svdb version
|
2022-05-06 00:18:16 +02:00 |
|
Ramprasad Neethiraj
|
af73544010
|
update meta
|
2022-05-06 00:13:49 +02:00 |
|
Ramprasad Neethiraj
|
db56d80060
|
Merge branch 'master' of https://github.com/nf-core/modules into feat/update_cnvpytor
|
2022-05-06 00:10:28 +02:00 |
|
Ramprasad Neethiraj
|
e4e4f8090c
|
combine multiple pytor
|
2022-05-05 23:59:12 +02:00 |
|
JIANHONG OU
|
e391c65510
|
fix the version issue for motus_profile.
|
2022-05-05 15:35:31 -04:00 |
|
JIANHONG OU
|
b8efa2ae7c
|
Merge branch 'master' into motus_profile
|
2022-05-05 13:41:54 -04:00 |
|
JIANHONG OU
|
fb5c5d310a
|
update motus module.
|
2022-05-05 13:38:46 -04:00 |
|
Sateesh Peri
|
faf45edc5e
|
Merge branch 'master' into busco
|
2022-05-05 12:48:39 -04:00 |
|
Ramprasad Neethiraj
|
db2acba71b
|
Merge branch 'master' into feat/update_cnvpytor
|
2022-05-05 17:31:10 +02:00 |
|
Ramprasad Neethiraj
|
c183d7b397
|
Merge branch 'feat/update_cnvpytor' of github.com:ramprasadn/modules into feat/update_cnvpytor
|
2022-05-05 17:28:59 +02:00 |
|
Ramprasad Neethiraj
|
ea1f5daf44
|
polish python script in view
|
2022-05-05 17:28:49 +02:00 |
|
Harshil Patel
|
1289626cc9
|
Update modules/busco/main.nf
|
2022-05-05 16:09:45 +01:00 |
|
Mahesh Binzer-Panchal
|
2542ae1823
|
Update modules/busco/main.nf
Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com>
|
2022-05-05 16:33:32 +02:00 |
|
Sateesh Peri
|
3414d3aba3
|
Merge branch 'master' into busco
|
2022-05-05 10:08:55 -04:00 |
|
JIANHONG OU
|
c8f2c44e22
|
Merge remote-tracking branch 'origin' into motus_profile
|
2022-05-05 09:41:13 -04:00 |
|
JIANHONG OU
|
a8bc386ea3
|
Merge branch 'master' into motus_downloaddb
|
2022-05-05 09:36:25 -04:00 |
|
JIANHONG OU
|
566c11dacc
|
Merge branch 'master' into motus_downloaddb
|
2022-05-05 08:28:10 -04:00 |
|
Francesco L
|
97f318eea6
|
Merge branch 'master' into firstbranch
|
2022-05-05 14:25:00 +02:00 |
|
Carpanzano
|
a700a9c15e
|
Merge branch 'firstbranch' of github.com:carpanz/modules into firstbranch
|
2022-05-05 13:52:45 +02:00 |
|
Carpanzano
|
9083d3bb3d
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integrating suggestions from PR comments, including recovery of tests for kronadb and more detailed explanation of input database in yml file
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2022-05-05 13:51:41 +02:00 |
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jasmezz
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47a95388c2
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Remove trailing whitespaces (ECLint check)
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2022-05-05 13:17:36 +02:00 |
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jasmezz
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24b9c397dd
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Apply suggestions from code review + add support for GFF annotations
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2022-05-05 13:14:39 +02:00 |
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MaxUlysse
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40dd662fd2
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update ensemblvep and snpeff modules
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2022-05-05 12:57:14 +02:00 |
|
James A. Fellows Yates
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e60c6f9bfd
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Merge branch 'master' into firstbranch
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2022-05-05 10:57:27 +02:00 |
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Carpanzano
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204dfba2d8
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fixing ktupdatetaxonomy/meta.yml as suggested in PR
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2022-05-05 10:51:22 +02:00 |
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Mahesh Binzer-Panchal
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865ad3447a
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Update meta.yml output files
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2022-05-05 08:23:54 +00:00 |
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jasmezz
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6a7aec8b41
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Remove prokka test workflow
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2022-05-05 10:22:02 +02:00 |
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Mahesh Binzer-Panchal
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58ea709f7f
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Merge branch 'master' into busco
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2022-05-05 09:34:14 +02:00 |
|
James A. Fellows Yates
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6393a085c5
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Apply suggestions from code review
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2022-05-05 08:23:51 +02:00 |
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JIANHONG OU
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29ee72c693
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update meta.yml and remove the cleanup step.
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2022-05-04 15:37:12 -04:00 |
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JIANHONG OU
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e9c82a5f48
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Update modules/motus/downloaddb/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-04 15:29:06 -04:00 |
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James A. Fellows Yates
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35b5ba673f
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Merge branch 'master' into motus_downloaddb
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2022-05-04 20:58:08 +02:00 |
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James A. Fellows Yates
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ec5bada3fc
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Update modules/motus/downloaddb/meta.yml
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2022-05-04 20:55:16 +02:00 |
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Lauri Mesilaakso
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e757966566
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-04 18:41:36 +03:00 |
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Carpanzano
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a6086f549d
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recovered process name
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2022-05-04 17:28:24 +02:00 |
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Nicolas Vannieuwkerke
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3c07602443
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Added the version.yml
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2022-05-04 16:51:09 +02:00 |
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Carpanzano
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8b1711d8a1
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recovering old module name
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2022-05-04 16:38:10 +02:00 |
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Simone Carpanzano
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162f8edf54
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Merge branch 'master' into firstbranch
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2022-05-04 16:35:25 +02:00 |
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Carpanzano
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6b8ca501ed
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fixing suggestions from PR
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2022-05-04 16:34:52 +02:00 |
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Nicolas Vannieuwkerke
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f875aec46b
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Split the module into two parts
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2022-05-04 15:29:48 +02:00 |
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Mahesh Binzer-Panchal
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5986a3efbf
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Merge branch 'master' into busco
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2022-05-04 15:09:54 +02:00 |
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Nicolas Vannieuwkerke
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505ab03803
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fixed a description
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2022-05-04 14:14:53 +02:00 |
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Nicolas Vannieuwkerke
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177a7e49f2
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Fixed a linting issue
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2022-05-04 14:06:42 +02:00 |
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Nicolas Vannieuwkerke
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000b8ee2e0
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Merge branch 'new-module-hap.py' of github.com:nvnieuwk/modules into new-module-hap.py
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2022-05-04 14:05:23 +02:00 |
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Nicolas Vannieuwkerke
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065a5d6a7f
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Fixed a linting issue
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2022-05-04 14:05:21 +02:00 |
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nvnieuwk
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c9808cb97f
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Merge branch 'master' into new-module-hap.py
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2022-05-04 14:01:02 +02:00 |
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Nicolas Vannieuwkerke
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37338ecee3
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Finished the module
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2022-05-04 14:00:02 +02:00 |
|
Ramprasad Neethiraj
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6541e151bc
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Merge branch 'master' into feat/update_cnvpytor
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2022-05-04 13:54:46 +02:00 |
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Mahesh Binzer-Panchal
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73a8df9522
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Fix no genes found test and update test.yml
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2022-05-04 11:52:42 +00:00 |
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Nicolas Vannieuwkerke
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c517ce9b4d
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Added the module and some simple testing
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2022-05-04 13:42:12 +02:00 |
|
Mahesh Binzer-Panchal
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8df20218bf
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Add more tests and capture summaries
Co-authored-by: Jill V. Hagey, PhD <jvhagey@gmail.com>
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2022-05-04 09:22:43 +00:00 |
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Mahesh Binzer-Panchal
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3bb0711b06
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Merge branch 'master' into busco
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2022-05-04 09:15:46 +02:00 |
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Lauri Mesilaakso
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530b5ac661
|
Merge branch 'master' into add_compression_to_bam2fq
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2022-05-04 09:53:46 +03:00 |
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Chris Cheshire
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79e64cdd1f
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Merge branch 'master' into expected_error_fix
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2022-05-03 22:21:28 +01:00 |
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JIANHONG OU
|
dc59ad0bf5
|
fix the version issue.
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2022-05-03 12:27:39 -04:00 |
|
jasmezz
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480c4ced78
|
Update meta.yml
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2022-05-03 17:35:16 +02:00 |
|
jasmezz
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fa9f0753de
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Apply review suggestions + add stub for prokka test workflow
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2022-05-03 17:30:16 +02:00 |
|
Jill V. Hagey, PhD
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f02cd618b8
|
Update meta.yml
|
2022-05-03 10:09:19 -04:00 |
|
Lauri Mesilaakso
|
12f79c2101
|
Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 17:03:02 +03:00 |
|
Mahesh Binzer-Panchal
|
1c54c0b1ae
|
Apply suggestions from code review
Co-authored-by: Matthieu Muffato <cortexspam-github@yahoo.fr>
|
2022-05-03 16:02:11 +02:00 |
|
Matthieu Muffato
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6351ec745e
|
Update contributor list
|
2022-05-03 14:56:27 +01:00 |
|
Matthieu Muffato
|
4be754b008
|
It's a file, not a directory
|
2022-05-03 14:53:17 +01:00 |
|
Mahesh Binzer-Panchal
|
636abad8f1
|
Merge branch 'master' into busco
|
2022-05-03 15:38:25 +02:00 |
|
Nicolas Vannieuwkerke
|
96d4a31cc1
|
Moved the BED file to the main tuple
|
2022-05-03 15:31:05 +02:00 |
|
Mahesh Binzer-Panchal
|
5f4781adaa
|
Merge branch 'master' into busco
|
2022-05-03 15:27:10 +02:00 |
|
Mahesh Binzer-Panchal
|
57db28386e
|
Support batch fasta analysis
|
2022-05-03 13:26:49 +00:00 |
|
ljmesi
|
034352dbbf
|
Merge branch 'add_compression_to_bam2fq' of https://github.com/Genomic-Medicine-Linkoping/modules into add_compression_to_bam2fq
|
2022-05-03 15:18:12 +02:00 |
|
ljmesi
|
5510ea39fe
|
Test --no-name to solve inconsistent checksums
|
2022-05-03 15:18:09 +02:00 |
|
Ramprasad Neethiraj
|
26311aba2a
|
fix minor errors
|
2022-05-03 15:04:37 +02:00 |
|
Ramprasad Neethiraj
|
be085c0173
|
Merge branch 'master' of https://github.com/nf-core/modules into feat/update_cnvpytor
|
2022-05-03 14:55:42 +02:00 |
|
Ramprasad Neethiraj
|
19cfb4e951
|
update meta files
|
2022-05-03 14:53:56 +02:00 |
|
Ramprasad Neethiraj
|
3efa931bf6
|
view
|
2022-05-03 14:26:46 +02:00 |
|
Ramprasad Neethiraj
|
829c15c98b
|
partition
|
2022-05-03 14:26:34 +02:00 |
|
Ramprasad Neethiraj
|
7cc47f6ba6
|
importrd
|
2022-05-03 14:25:20 +02:00 |
|
Ramprasad Neethiraj
|
07e026054a
|
histogram
|
2022-05-03 14:24:54 +02:00 |
|
Ramprasad Neethiraj
|
2990dc8357
|
callcnv module
|
2022-05-03 14:20:05 +02:00 |
|
Lauri Mesilaakso
|
a65e76e3dd
|
Merge branch 'master' into add_compression_to_bam2fq
|
2022-05-03 14:30:54 +03:00 |
|
Chris Cheshire
|
6f35537d40
|
Merge branch 'master' into expected_error_fix
|
2022-05-03 12:21:51 +01:00 |
|
Chris Cheshire
|
829183ee84
|
Merge branch 'master' into rp3-add-shigatyper
|
2022-05-03 12:16:54 +01:00 |
|
Chris Cheshire
|
6015478b72
|
Merge branch 'master' into add-slimfastq
|
2022-05-03 12:11:19 +01:00 |
|
Chris Cheshire
|
d7fb969a74
|
Merge branch 'master' into rp3-add-shigatyper
|
2022-05-03 12:10:23 +01:00 |
|
Chris Cheshire
|
61f68913fe
|
Merge branch 'master' into expected_error_fix
|
2022-05-03 11:49:35 +01:00 |
|
Chris Cheshire
|
768073be63
|
bowtie2|Added support for large indexes
|
2022-05-03 11:46:19 +01:00 |
|
Mahesh Binzer-Panchal
|
012f085378
|
Prettier
|
2022-05-03 09:19:39 +00:00 |
|
Mahesh Binzer-Panchal
|
9eff38ff94
|
Update meta.yml
|
2022-05-03 09:15:45 +00:00 |
|
Mahesh Binzer-Panchal
|
ddbe6e8f40
|
Merge branch 'master' into busco
|
2022-05-03 10:48:03 +02:00 |
|
Mahesh Binzer-Panchal
|
9a72548ee1
|
Update busco module
|
2022-05-03 08:42:56 +00:00 |
|
Lauri Mesilaakso
|
6367c6a1ad
|
Merge branch 'master' into add_compression_to_bam2fq
|
2022-05-03 11:41:25 +03:00 |
|