Bruno Grande
|
1c7230cb08
|
Add Sage-specific Sarek config
|
2022-06-23 09:15:42 -07:00 |
|
Phil Ewels
|
1730751d97
|
Merge pull request #389 from Sage-Bionetworks-Workflows/bgrande/sage-config
[WIP] Add custom configuration for Sage Bionetworks
|
2022-06-23 11:34:40 +02:00 |
|
Bruno Grande
|
37121faf4a
|
Fix typoe with label name
|
2022-06-22 14:37:43 -07:00 |
|
Bruno Grande
|
ecd898584d
|
Handle Sarek-specific max labels
|
2022-06-22 13:54:13 -07:00 |
|
Bruno Grande
|
c7093dee13
|
Reduce max_memory to fit on an instance
|
2022-06-16 12:37:32 -07:00 |
|
James Fellows Yates
|
acabcbd9e8
|
Use _JAVA_OPTIONS instead
|
2022-06-15 15:27:40 +02:00 |
|
James Fellows Yates
|
76b0d1dd85
|
Merge branch 'eva-java-correction' of github.com:jfy133/nf-core-configs into eva-java-correction
|
2022-06-15 15:22:25 +02:00 |
|
James Fellows Yates
|
58dd9d49c7
|
Move beforeScript exports to env scope
|
2022-06-15 15:21:20 +02:00 |
|
Bruno Grande
|
2898736cbe
|
Add Sage Bionetworks nf-core configuration
|
2022-06-08 14:16:52 -07:00 |
|
Maxime U. Garcia
|
b50af6bf7e
|
Merge pull request #388 from nvnieuwk/singularity-fix-for-vsc_ugent
Singularity fix for vsc ugent
|
2022-06-08 16:34:38 +02:00 |
|
Nicolas Vannieuwkerke
|
b6d38859f0
|
fix for singularity cache for vsc_ugent profile
|
2022-06-08 16:28:28 +02:00 |
|
Nicolas Vannieuwkerke
|
98eacf030d
|
fix for singularity cache for vsc_ugent profile
|
2022-06-08 16:27:48 +02:00 |
|
Maxime U. Garcia
|
844d250011
|
Merge branch 'master' into eva-java-correction
|
2022-06-07 11:57:05 +02:00 |
|
Maxime U. Garcia
|
5fdc8b7b1b
|
Merge pull request #381 from maxulysse/master
add fix linting from comment
|
2022-06-07 11:54:19 +02:00 |
|
Maxime U. Garcia
|
b0f1746abf
|
Merge branch 'master' into master
|
2022-06-07 11:42:50 +02:00 |
|
James A. Fellows Yates
|
515cbf0a77
|
Merge pull request #385 from nvnieuwk/fix-for-failing-tests-vsc-ugent-profile
Fix for failing tests for vsc_ugent
|
2022-06-07 11:41:00 +02:00 |
|
Nicolas Vannieuwkerke
|
44e25830e4
|
update for vsc_ugent
|
2022-06-07 11:33:22 +02:00 |
|
James A. Fellows Yates
|
46fba9c597
|
Update eva.config
|
2022-06-03 21:10:48 +02:00 |
|
James A. Fellows Yates
|
05cc8a08f1
|
Update eva.config
|
2022-06-03 21:08:19 +02:00 |
|
Maxime U. Garcia
|
4587fc4215
|
Merge pull request #379 from nf-core/config_ucph-mjolnir_ash
custom config mjolnir_globe
|
2022-06-03 17:28:57 +02:00 |
|
Åshild J. Vågene
|
ed526530d2
|
Rename mjolnir_globe to mjolnir_globe.config
|
2022-06-03 17:15:12 +02:00 |
|
Åshild J. Vågene
|
34feaa8b6b
|
prettier output
|
2022-06-03 17:08:15 +02:00 |
|
Åshild J. Vågene
|
2d82218318
|
typo
|
2022-06-03 16:42:08 +02:00 |
|
MaxUlysse
|
5a04f62681
|
add fix linting from comment
|
2022-06-03 15:57:24 +02:00 |
|
Åshild J. Vågene
|
144ca851c1
|
Update mjolnir_globe.md
|
2022-06-03 15:36:19 +02:00 |
|
Åshild J. Vågene
|
22ed36a73d
|
cacheDir update
|
2022-06-03 15:33:58 +02:00 |
|
James Fellows Yates
|
9ef52af084
|
Increase overhead
|
2022-06-03 14:24:27 +02:00 |
|
James Fellows Yates
|
c40ebb9acf
|
Add overhead for get_software_versions
|
2022-06-03 14:21:41 +02:00 |
|
James Fellows Yates
|
df0429ce9d
|
Replace oracle specific _JAVA_OPTIONS to portable JAVA_TOOLS_OPTIONS
|
2022-06-03 14:20:39 +02:00 |
|
Phil Ewels
|
b51059a3ae
|
Merge branch 'master' into config_ucph-mjolnir_ash
|
2022-06-03 13:21:36 +02:00 |
|
James A. Fellows Yates
|
7353fb257d
|
Merge pull request #380 from jfy133/taxprofiler
Add MAG @ EVA profile
|
2022-06-03 12:54:47 +02:00 |
|
James A. Fellows Yates
|
24e165c52d
|
Update pipeline/mag.config
|
2022-06-03 12:51:47 +02:00 |
|
James A. Fellows Yates
|
97d57539e3
|
Apply suggestions from code review
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
|
2022-06-03 12:51:20 +02:00 |
|
James Fellows Yates
|
5a67eba04c
|
Add MAG @ EVA profile
|
2022-06-03 12:41:08 +02:00 |
|
Åshild J. Vågene
|
1d23ba9264
|
change name of tmp dir to .tmp_nfcore
|
2022-06-02 16:40:29 +02:00 |
|
Åshild J. Vågene
|
2b67d3aaab
|
Update main.yml
|
2022-06-02 16:30:35 +02:00 |
|
Åshild J. Vågene
|
62dfda8103
|
add mjolnir_globe md
|
2022-06-02 16:07:47 +02:00 |
|
Åshild J. Vågene
|
7a63e0a2ec
|
mjolnir_globe config added
|
2022-06-02 16:05:28 +02:00 |
|
Åshild J. Vågene
|
0f6fb0c10d
|
Update mjolnir_globe.md
|
2022-06-02 16:00:22 +02:00 |
|
Åshild J. Vågene
|
e871dc87f9
|
Update mjolnir_globe.md
|
2022-06-02 15:59:11 +02:00 |
|
Åshild J. Vågene
|
940077190b
|
Update mjolnir_globe.md
|
2022-06-02 15:38:40 +02:00 |
|
Åshild J. Vågene
|
2988e33576
|
Create mjolnir_globe.md
|
2022-06-02 15:38:07 +02:00 |
|
Åshild J. Vågene
|
9b9a6f0188
|
Update and rename holo_globe to mjolnir_globe
|
2022-06-02 15:09:52 +02:00 |
|
Åshild J. Vågene
|
6d9cc91c5f
|
Update holo_globe
|
2022-06-02 15:03:47 +02:00 |
|
Åshild J. Vågene
|
64fe4677b1
|
Update holo_globe
|
2022-05-31 15:26:23 +02:00 |
|
Åshild J. Vågene
|
0b51552e88
|
Update holo_globe
|
2022-05-31 15:23:43 +02:00 |
|
Emil Bertilsson
|
80e2a50a2f
|
Merge pull request #378 from raysloks/feat/hasta_java_memory_fix
Feat/hasta java memory fix
|
2022-05-30 14:40:52 +02:00 |
|
Emil
|
8453f6b41a
|
Moves qualimap arg to pipeline-specific config
|
2022-05-30 12:58:12 +02:00 |
|
Emil
|
29fa08c434
|
Adds _JAVA_OPTIONS to singularity whitelist
|
2022-05-30 11:07:24 +02:00 |
|
Emil
|
19497a4183
|
Makes qualimap fix work for most memory amounts
|
2022-05-30 11:06:48 +02:00 |
|