pierrespc
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f6266879d6
|
edited maestronuclear and maestromitocondrial configs. The latter has not been optimized yet
|
2021-09-29 13:47:35 +02:00 |
|
pierrespc
|
b71df6fe57
|
renamed eager pipeline config file
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2021-09-29 13:22:07 +02:00 |
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pierrespc
|
9ea3e2096a
|
long and normal qos profiles defined now in an unique maestro config file. maestro.config also defined in pipeline/eager for ressources assignation to specific processes
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2021-09-29 13:11:14 +02:00 |
|
Bjørn Peare Bartholdy
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e750a6d445
|
Update conf/alice.config
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
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2021-09-28 13:34:12 +02:00 |
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Bjørn Peare Bartholdy
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197bd6cfb1
|
Merge branch 'nf-core:master' into master
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2021-09-28 12:09:50 +02:00 |
|
bbartholdy
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b6ccb46383
|
add ALICE profile
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2021-09-28 12:08:27 +02:00 |
|
Mei Wu
|
79a79f7d8d
|
added pipeline-specific config
|
2021-09-28 10:38:25 +02:00 |
|
Mei Wu
|
c2d74b290a
|
fix md
|
2021-09-27 16:25:02 +02:00 |
|
Mei Wu
|
a8a2027f70
|
Merge branch 'master' into hasta
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2021-09-27 16:12:23 +02:00 |
|
Mei Wu
|
06fac1dcfc
|
initial commit
|
2021-09-27 16:05:32 +02:00 |
|
Mei Wu
|
ae0adb056f
|
initial commit
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2021-09-27 16:05:19 +02:00 |
|
Anthony Underwood
|
7469e20b4e
|
change max_time diretcive in the correct place
|
2021-09-25 09:23:24 +01:00 |
|
Anthony Underwood
|
6a970dc4a8
|
update max time for long queue
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2021-09-23 11:59:45 +01:00 |
|
Patrick Hüther
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1cbe2759c4
|
fix invalid rapid qos selection
it only applies to the c partition
|
2021-09-22 11:54:27 +02:00 |
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pierrespc
|
3e22b85b02
|
maestro only for normal qos
|
2021-09-22 10:13:46 +02:00 |
|
Anthony Underwood
|
50df2105fb
|
update long jobs to be submitted to the long queue
|
2021-09-21 14:42:59 +01:00 |
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pierrespc
|
3b593d46ec
|
merged two pasteur config files for maestro
|
2021-09-20 15:14:50 +02:00 |
|
Harshil Patel
|
5068e4806f
|
Merge pull request #271 from theoportlock/master
Adds Rosalind config for KCL!
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2021-09-17 13:36:19 +01:00 |
|
Harshil Patel
|
3b95fd9ee3
|
Update conf/rosalind.config
|
2021-09-17 13:15:09 +01:00 |
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theoportlock
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9116a09afe
|
Fixes formatting and ignore_params
|
2021-09-17 13:21:32 +02:00 |
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pierrespc
|
4614ff6f45
|
change max mem in Normal
|
2021-09-16 16:50:45 +02:00 |
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pierrespc
|
de2a745fde
|
change type in Normal name
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2021-09-16 16:48:26 +02:00 |
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pierrespc
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482e7cf8de
|
2 config files for Maestro HPC at Pasteur Institute, Paris
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2021-09-16 12:40:56 +02:00 |
|
Marc Trunjer Kusk Nielsen
|
a55c3c04eb
|
Update computerome.config
Adding genomes and modules back into schema_ingore_params to avoid warnings about unexpected parameters.
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2021-09-15 19:54:51 +02:00 |
|
Marc Trunjer Kusk Nielsen
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8b29b5584e
|
Update computerome.config
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2021-09-15 14:20:02 +02:00 |
|
Marc Trunjer Kusk Nielsen
|
ab8a9ad0b8
|
Update computerome.config
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2021-09-15 13:27:23 +02:00 |
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theoportlock
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9c97220919
|
Merge branch 'master' of https://github.com/theoportlock/configs
|
2021-09-15 11:43:09 +02:00 |
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theoportlock
|
3c86f8f47c
|
Removes the broken clusterOptions
|
2021-09-15 11:42:43 +02:00 |
|
Marc Trunjer Kusk Nielsen
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aad70fe86d
|
Merge branch 'nf-core:master' into computerome
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2021-09-15 11:08:48 +02:00 |
|
Marc Trunjer Kusk Nielsen
|
29003e13f1
|
Update computerome.config
|
2021-09-15 10:22:57 +02:00 |
|
James A. Fellows Yates
|
a7b1183065
|
Remove 1CPU for host removal fastq
|
2021-09-14 11:52:21 +02:00 |
|
Marc Trunjer Kusk Nielsen
|
86e21b378a
|
Update computerome.config
|
2021-09-13 14:26:10 +02:00 |
|
Marc Trunjer Kusk Nielsen
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275288632d
|
Update computerome.config
|
2021-09-13 14:22:22 +02:00 |
|
Marc Trunjer Kusk Nielsen
|
366f945a40
|
Update computerome.config
|
2021-09-13 14:20:55 +02:00 |
|
Marc Trunjer Kusk Nielsen
|
8ebdd43898
|
Update computerome.config
|
2021-09-13 14:01:35 +02:00 |
|
Marc Trunjer Kusk Nielsen
|
1071eb9d2e
|
Update computerome.config
|
2021-09-13 13:38:46 +02:00 |
|
Marc Trunjer Kusk Nielsen
|
2e515dc861
|
Update computerome.config
Don't raise an error when --project is specified
|
2021-09-13 13:38:25 +02:00 |
|
Marc Trunjer Kusk Nielsen
|
e5cba18c9b
|
Update computerome.config
|
2021-09-13 13:28:33 +02:00 |
|
Marc Trunjer Kusk Nielsen
|
0327ef40ea
|
Update computerome.config
|
2021-09-13 13:20:57 +02:00 |
|
Marc Trunjer Kusk Nielsen
|
a0ba05fd99
|
Update computerome.config
|
2021-09-13 08:36:30 +02:00 |
|
Marc Trunjer Kusk Nielsen
|
84f94d92c4
|
Update computerome.config
Added a way to use `--project` to provide project information to the scheduler. Inspired by the uppmax config
|
2021-09-10 15:10:19 +02:00 |
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Marc Trunjer Kusk Nielsen
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463df26c72
|
Merge branch 'nf-core:master' into computerome
|
2021-09-10 14:47:05 +02:00 |
|
James A. Fellows Yates
|
7c639ac934
|
Bump lib merge further
|
2021-09-09 14:47:20 +02:00 |
|
James A. Fellows Yates
|
0603aba342
|
Remove debugging stuff
|
2021-09-09 13:54:01 +02:00 |
|
James A. Fellows Yates
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c799784629
|
Merge pull request #273 from jfy133/mpcdf-fix
Add auto-cleanup for MPCDF
|
2021-09-09 13:41:29 +02:00 |
|
Theo Portlock
|
05ad3e0577
|
Update conf/rosalind.config
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2021-09-09 13:37:02 +02:00 |
|
James A. Fellows Yates
|
d479926c7f
|
Update mpcdf.config
|
2021-09-09 13:33:56 +02:00 |
|
James A. Fellows Yates
|
7ec12b6736
|
Update eva.config
|
2021-09-09 13:10:05 +02:00 |
|
James A. Fellows Yates
|
96e26a5411
|
Merge pull request #272 from jfy133/eva-eager-subprofiles
Bump additional library merge memory for eager @ EVA
|
2021-09-08 15:25:07 +02:00 |
|
James A. Fellows Yates
|
4286a3a342
|
Bump additional library merge memor
|
2021-09-08 15:16:40 +02:00 |
|
theoportlock
|
b240142cc3
|
Adds rosalind configuration
|
2021-09-08 14:33:39 +02:00 |
|
Rogan Grant
|
a7aca37bc8
|
Set autoMounts to true
|
2021-09-06 15:15:46 -05:00 |
|
Rogan Grant
|
b56b7b310b
|
Merge pull request #266 from RoganGrant/master
Northwestern University Genomics Nodes (new add)
|
2021-09-06 13:26:49 -05:00 |
|
James A. Fellows Yates
|
39f54db097
|
Update container cache
|
2021-09-05 12:09:02 +02:00 |
|
James A. Fellows Yates
|
59a0901b68
|
Add library merge steps to have overhead
|
2021-09-05 12:07:53 +02:00 |
|
Rogan Grant
|
54298ca0f7
|
Merge branch 'nf-core:master' into master
|
2021-09-04 15:37:03 -05:00 |
|
rogangrant
|
a8d06ee356
|
Revert "Forgot a slash :("
This reverts commit d5601fea84 .
|
2021-09-04 15:36:05 -05:00 |
|
Rogan Grant
|
d5601fea84
|
Forgot a slash :(
|
2021-09-04 15:19:32 -05:00 |
|
Rogan Grant
|
2c5e454d16
|
Updated iGenomes path for odd local structure on Quest
|
2021-09-04 15:13:41 -05:00 |
|
Marc Trunjer Kusk Nielsen
|
1bf2d436d4
|
Update computerome.config
|
2021-09-01 22:21:31 +02:00 |
|
Marc Trunjer Kusk Nielsen
|
e2d54cb56c
|
Update computerome.config
|
2021-09-01 22:06:56 +02:00 |
|
Marc Trunjer Kusk Nielsen
|
a1413ce18e
|
Update computerome.config
|
2021-09-01 21:47:48 +02:00 |
|
Marc Trunjer Kusk Nielsen
|
d4c71f0d8d
|
Update computerome.config
|
2021-09-01 13:22:31 +02:00 |
|
Marc Trunjer Kusk Nielsen
|
fdac67afbf
|
Create computerome.config
|
2021-08-31 13:58:39 +02:00 |
|
James A. Fellows Yates
|
94cbb031c6
|
Update eva.config
|
2021-08-30 13:29:44 +02:00 |
|
Patrick Hüther
|
6c4998fa8a
|
reduce max_memory to 1.8TB
|
2021-08-27 14:01:34 +02:00 |
|
James A. Fellows Yates
|
5fbd938bc1
|
Export user env too
|
2021-08-27 10:08:20 +02:00 |
|
James A. Fellows Yates
|
bcb844f896
|
Merge pull request #268 from jfy133/master
Delete SHH profiles due to decommissioning
|
2021-08-23 14:08:13 +02:00 |
|
James Fellows Yates
|
59af7f0eee
|
Delete SHH profiles due to decommissioning
|
2021-08-20 10:15:39 +02:00 |
|
James A. Fellows Yates
|
6701354060
|
Add genotyping_ug to SGE fixes
|
2021-08-20 10:11:11 +02:00 |
|
James Fellows Yates
|
b0e344846d
|
Changes after code review from @aidaanva
|
2021-08-04 10:37:49 +02:00 |
|
James Fellows Yates
|
76fc461670
|
Try new strategy for SGE/JAVA bs
|
2021-08-04 10:14:56 +02:00 |
|
Rogan Grant
|
f793ffaace
|
Updated iGenomes location
|
2021-08-03 15:10:54 -05:00 |
|
James A. Fellows Yates
|
00491de038
|
Update eva.config
|
2021-08-03 13:54:14 +02:00 |
|
Rogan Grant
|
24a2949fe2
|
Had executor options in wrong spot :(
|
2021-07-28 18:05:45 -05:00 |
|
Rogan Grant
|
6862fb8bfd
|
testing ternary operatory
|
2021-07-28 18:01:03 -05:00 |
|
Rogan Grant
|
bcc69fe83c
|
Enable use of himem nodes
|
2021-07-28 17:54:51 -05:00 |
|
Rogan Grant
|
ac11ca5568
|
Remove echo used for testing
|
2021-07-28 16:48:08 -05:00 |
|
Rogan Grant
|
3dd4f16d09
|
Added indicator for testing
|
2021-07-28 14:01:12 -05:00 |
|
Rogan Grant
|
09ed4d54b9
|
Just make command a single line for simplicity
|
2021-07-28 13:52:26 -05:00 |
|
Rogan Grant
|
09e0ea2674
|
typo
|
2021-07-28 13:46:40 -05:00 |
|
Rogan Grant
|
e1e0810d1b
|
Clean up module loading script
|
2021-07-28 13:44:48 -05:00 |
|
Rogan Grant
|
e2c566ed13
|
Testing "automounts"
|
2021-07-28 13:38:06 -05:00 |
|
Rogan Grant
|
f104250ff4
|
Removed comment
|
2021-07-28 13:34:49 -05:00 |
|
Rogan Grant
|
9df267a192
|
Merged duplicate params
|
2021-07-28 13:27:17 -05:00 |
|
Rogan Grant
|
ff6823ec1d
|
removed unnecessary space
|
2021-07-28 13:22:52 -05:00 |
|
Rogan Grant
|
9957e9eea1
|
Version 1 of custom config with queue-switching for long jobs and module loading
|
2021-07-28 13:11:02 -05:00 |
|
Barry digby
|
70b2644c9a
|
.
|
2021-07-27 17:39:37 +01:00 |
|
Barry digby
|
2b6e80561a
|
Merge branch 'master' of https://github.com/nf-core/configs into
|
2021-07-27 17:13:17 +01:00 |
|
Barry digby
|
4f962260d0
|
s
|
2021-07-27 17:08:53 +01:00 |
|
Barry digby
|
04c0da5a2f
|
nuig confg (lugh)
|
2021-07-27 17:05:27 +01:00 |
|
ameynert
|
2112168420
|
Set BLASTDB_LMDB_MAP_SIZE
This environment variable needs to be set in order to prevent memory allocation errors in the MAKEBLASTDB process.
|
2021-07-22 15:07:19 +01:00 |
|
ameynert
|
4ceb369af5
|
eddie.config for viralrecon pipeline
|
2021-07-21 12:10:43 +01:00 |
|
Maxime U. Garcia
|
30e058abf0
|
Merge branch 'master' into master_kraken
|
2021-07-20 09:26:56 +02:00 |
|
Harshil Patel
|
962dca7a46
|
Add ARTIC v1200 primers to genomes config for viralrecon
|
2021-07-12 12:24:49 +01:00 |
|
Gisela Gabernet
|
e2088a008d
|
Merge branch 'master' into master
|
2021-07-03 12:24:42 +02:00 |
|
ggabernet
|
ee2e8392ab
|
add aws_tower profile
|
2021-07-03 12:17:21 +02:00 |
|
Harshil Patel
|
69f63a006d
|
Merge pull request #254 from drpatelh/articv4
Add ARTIC v4 primers to genomes config for viralrecon
|
2021-07-01 12:31:02 +01:00 |
|
Gisela Gabernet
|
aae0f0bf07
|
Merge pull request #255 from ggabernet/master
update cfc configs
|
2021-07-01 10:59:25 +02:00 |
|
ggabernet
|
d59d099fe8
|
remove load module in cfc configs
|
2021-07-01 10:52:54 +02:00 |
|