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Author	SHA1	Message	Date
James Fellows Yates	ba8bffbdfd	Use env scope instead of beforescript for mag@eva	2022-06-15 15:39:36 +02:00
James Fellows Yates	d12d98fb2e	Merge branches 'master' and 'eva-java-correction' of github.com:jfy133/nf-core-configs into master	2022-06-15 15:38:35 +02:00
James Fellows Yates	acabcbd9e8	Use _JAVA_OPTIONS instead	2022-06-15 15:27:40 +02:00
James Fellows Yates	76b0d1dd85	Merge branch 'eva-java-correction' of github.com:jfy133/nf-core-configs into eva-java-correction	2022-06-15 15:22:25 +02:00
James Fellows Yates	58dd9d49c7	Move beforeScript exports to env scope	2022-06-15 15:21:20 +02:00
Maxime U. Garcia	b50af6bf7e	Merge pull request #388 from nvnieuwk/singularity-fix-for-vsc_ugent ... Singularity fix for vsc ugent	2022-06-08 16:34:38 +02:00
Nicolas Vannieuwkerke	b6d38859f0	fix for singularity cache for vsc_ugent profile	2022-06-08 16:28:28 +02:00
Nicolas Vannieuwkerke	98eacf030d	fix for singularity cache for vsc_ugent profile	2022-06-08 16:27:48 +02:00
Maxime U. Garcia	844d250011	Merge branch 'master' into eva-java-correction	2022-06-07 11:57:05 +02:00
Maxime U. Garcia	5fdc8b7b1b	Merge pull request #381 from maxulysse/master ... add fix linting from comment	2022-06-07 11:54:19 +02:00
Maxime U. Garcia	b0f1746abf	Merge branch 'master' into master	2022-06-07 11:42:50 +02:00
James A. Fellows Yates	515cbf0a77	Merge pull request #385 from nvnieuwk/fix-for-failing-tests-vsc-ugent-profile ... Fix for failing tests for vsc_ugent	2022-06-07 11:41:00 +02:00
Nicolas Vannieuwkerke	44e25830e4	update for vsc_ugent	2022-06-07 11:33:22 +02:00
James A. Fellows Yates	46fba9c597	Update eva.config	2022-06-03 21:10:48 +02:00
James A. Fellows Yates	05cc8a08f1	Update eva.config	2022-06-03 21:08:19 +02:00
Maxime U. Garcia	4587fc4215	Merge pull request #379 from nf-core/config_ucph-mjolnir_ash ... custom config mjolnir_globe	2022-06-03 17:28:57 +02:00
Åshild J. Vågene	ed526530d2	Rename mjolnir_globe to mjolnir_globe.config	2022-06-03 17:15:12 +02:00
Åshild J. Vågene	34feaa8b6b	prettier output	2022-06-03 17:08:15 +02:00
Åshild J. Vågene	2d82218318	typo	2022-06-03 16:42:08 +02:00
MaxUlysse	5a04f62681	add fix linting from comment	2022-06-03 15:57:24 +02:00
Åshild J. Vågene	144ca851c1	Update mjolnir_globe.md	2022-06-03 15:36:19 +02:00
Åshild J. Vågene	22ed36a73d	cacheDir update	2022-06-03 15:33:58 +02:00
James Fellows Yates	9ef52af084	Increase overhead	2022-06-03 14:24:27 +02:00
James Fellows Yates	c40ebb9acf	Add overhead for get_software_versions	2022-06-03 14:21:41 +02:00
James Fellows Yates	df0429ce9d	Replace oracle specific _JAVA_OPTIONS to portable JAVA_TOOLS_OPTIONS	2022-06-03 14:20:39 +02:00
Phil Ewels	b51059a3ae	Merge branch 'master' into config_ucph-mjolnir_ash	2022-06-03 13:21:36 +02:00
James A. Fellows Yates	7353fb257d	Merge pull request #380 from jfy133/taxprofiler ... Add MAG @ EVA profile	2022-06-03 12:54:47 +02:00
James A. Fellows Yates	24e165c52d	Update pipeline/mag.config	2022-06-03 12:51:47 +02:00
James A. Fellows Yates	97d57539e3	Apply suggestions from code review ... Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>	2022-06-03 12:51:20 +02:00
James Fellows Yates	5a67eba04c	Add MAG @ EVA profile	2022-06-03 12:41:08 +02:00
Åshild J. Vågene	1d23ba9264	change name of tmp dir to .tmp_nfcore	2022-06-02 16:40:29 +02:00
Åshild J. Vågene	2b67d3aaab	Update main.yml	2022-06-02 16:30:35 +02:00
Åshild J. Vågene	62dfda8103	add mjolnir_globe md	2022-06-02 16:07:47 +02:00
Åshild J. Vågene	7a63e0a2ec	mjolnir_globe config added	2022-06-02 16:05:28 +02:00
Åshild J. Vågene	0f6fb0c10d	Update mjolnir_globe.md	2022-06-02 16:00:22 +02:00
Åshild J. Vågene	e871dc87f9	Update mjolnir_globe.md	2022-06-02 15:59:11 +02:00
Åshild J. Vågene	940077190b	Update mjolnir_globe.md	2022-06-02 15:38:40 +02:00
Åshild J. Vågene	2988e33576	Create mjolnir_globe.md	2022-06-02 15:38:07 +02:00
Åshild J. Vågene	9b9a6f0188	Update and rename holo_globe to mjolnir_globe	2022-06-02 15:09:52 +02:00
Åshild J. Vågene	6d9cc91c5f	Update holo_globe	2022-06-02 15:03:47 +02:00
Åshild J. Vågene	64fe4677b1	Update holo_globe	2022-05-31 15:26:23 +02:00
Åshild J. Vågene	0b51552e88	Update holo_globe	2022-05-31 15:23:43 +02:00
Emil Bertilsson	80e2a50a2f	Merge pull request #378 from raysloks/feat/hasta_java_memory_fix ... Feat/hasta java memory fix	2022-05-30 14:40:52 +02:00
Emil	8453f6b41a	Moves qualimap arg to pipeline-specific config	2022-05-30 12:58:12 +02:00
Emil	29fa08c434	Adds _JAVA_OPTIONS to singularity whitelist	2022-05-30 11:07:24 +02:00
Emil	19497a4183	Makes qualimap fix work for most memory amounts	2022-05-30 11:06:48 +02:00
Åshild J. Vågene	bb25c77e7c	Update holo_globe	2022-05-20 17:01:30 +02:00
Åshild J. Vågene	d3e5c79fb4	Create holo_globe	2022-05-20 15:44:20 +02:00
Phil Ewels	123706519e	Merge pull request #377 from nvnieuwk/vsc_ugent ... Typo in VSC UGent markdown	2022-05-20 10:55:39 +02:00
nvnieuwk	15e03bcc7b	Merge branch 'nf-core:master' into vsc_ugent	2022-05-20 10:36:51 +02:00