SusiJo
|
9ef09e6add
|
adjusted newlines
|
2022-05-31 14:54:39 +02:00 |
|
SusiJo
|
205576279f
|
ran prettier again
|
2022-05-31 14:50:55 +02:00 |
|
James Fellows Yates
|
430def06fa
|
Switch from md5sum to string due to conda flakiness
|
2022-05-31 14:45:41 +02:00 |
|
SusiJo
|
d484aa1906
|
adjusted tabs
|
2022-05-31 14:45:23 +02:00 |
|
SusiJo
|
e083bfafa0
|
ran prettier
|
2022-05-31 14:38:45 +02:00 |
|
SusiJo
|
1e396d767f
|
Merge remote-tracking branch 'upstream/master' into gatk_spark
|
2022-05-31 14:36:14 +02:00 |
|
SusiJo
|
ea526051a4
|
new test.yml
|
2022-05-31 14:35:42 +02:00 |
|
SusiJo
|
3117b2973c
|
added test for metrics
|
2022-05-31 14:35:29 +02:00 |
|
SusiJo
|
e0e8273f74
|
adjusted input to use queryname sorted bams
|
2022-05-31 14:35:18 +02:00 |
|
James Fellows Yates
|
723852bf3d
|
Fixes running without shortreads, and also ensures all tests produce non-empty fastq.gz files
|
2022-05-31 13:38:18 +02:00 |
|
James Fellows Yates
|
7ffe98ac8b
|
Add gatk/indelrealigner
|
2022-05-30 21:12:21 +02:00 |
|
jtangrot
|
6ae405c5da
|
prettier
|
2022-05-30 13:35:12 +02:00 |
|
jtangrot
|
6aac5c2c40
|
Update test
|
2022-05-30 13:30:27 +02:00 |
|
jtangrot
|
c67c15f243
|
Make input tuple
|
2022-05-30 13:01:06 +02:00 |
|
jtangrot
|
01d86439f5
|
Add idcutoff as input
|
2022-05-30 08:50:27 +02:00 |
|
jtangrot
|
589ce2d73a
|
Add options for output file type
|
2022-05-30 08:50:27 +02:00 |
|
jtangrot
|
1c99ffd876
|
Add vserach usearch_global
|
2022-05-30 08:50:27 +02:00 |
|
Harshil Patel
|
ad578cafcc
|
Fix tests
|
2022-05-27 12:14:10 +01:00 |
|
Sateesh Peri
|
ead3679829
|
Merge branch 'master' into rp3-add-snippy
|
2022-05-26 03:04:19 -04:00 |
|
Harshil Patel
|
241a1de035
|
Update main.nf
|
2022-05-25 19:38:12 +01:00 |
|
Matthias De Smet
|
bc7002b0c9
|
Merge branch 'master' into update/mosdepth
|
2022-05-25 19:20:45 +02:00 |
|
Matthias De Smet
|
72ff2732e3
|
add all remaining outputs to mosdepth
|
2022-05-25 19:19:39 +02:00 |
|
Mahesh Binzer-Panchal
|
3d532405a5
|
Merge branch 'master' into mash_screen_patch
|
2022-05-25 16:51:42 +02:00 |
|
SusiJo
|
1400f2e683
|
fixed tests - mixed chr21 + chr22
|
2022-05-25 16:38:30 +02:00 |
|
SusiJo
|
dd6d838cd7
|
override userEmulation
|
2022-05-25 16:37:44 +02:00 |
|
Mahesh Binzer-Panchal
|
c452f56289
|
Patch mash screen
|
2022-05-25 12:29:14 +00:00 |
|
jasmezz
|
77b5986463
|
Create ampir module
|
2022-05-25 13:27:10 +02:00 |
|
Jill V. Hagey, PhD
|
b1dd1d8a52
|
Merge branch 'nf-core:master' into gamma-update
|
2022-05-24 19:28:06 -04:00 |
|
jvhagey
|
127665d27b
|
fixed test.yml
|
2022-05-24 19:27:09 -04:00 |
|
Mahesh Binzer-Panchal
|
3d51956b88
|
Merge branch 'master' into kat_hist
|
2022-05-24 23:10:13 +02:00 |
|
jvhagey
|
b8aaea7429
|
updating paths in test.yml
|
2022-05-24 16:27:00 -04:00 |
|
jvhagey
|
f1fc7fc38e
|
adding upzip
|
2022-05-24 15:15:07 -04:00 |
|
Ramprasad Neethiraj
|
c91947f8a1
|
Merge branch 'master' into rhocall
|
2022-05-24 16:07:55 +02:00 |
|
Mahesh Binzer-Panchal
|
9a5d6a815b
|
Merge branch 'master' into kat_hist
|
2022-05-24 15:46:12 +02:00 |
|
SusiJo
|
3077e4d34c
|
Merge branch 'master' into cnvkit/reference
|
2022-05-24 15:00:29 +02:00 |
|
SusiJo
|
8208140d21
|
missing meta.id changed
|
2022-05-24 14:59:52 +02:00 |
|
Matthias De Smet
|
8381a5e5dd
|
add window test
|
2022-05-24 14:43:40 +02:00 |
|
Matthias De Smet
|
5bc2d419a9
|
fix fail test
|
2022-05-24 13:23:00 +02:00 |
|
Thiseas C. Lamnidis
|
6d04395c3c
|
Merge branch 'master' into sexdeterrmine
|
2022-05-24 13:17:37 +02:00 |
|
Mahesh Binzer-Panchal
|
afb5f226e6
|
Merge branch 'master' into kat_hist
|
2022-05-24 13:06:31 +02:00 |
|
Matthias De Smet
|
858cbe80c6
|
add must fail test
|
2022-05-24 12:43:49 +02:00 |
|
Matthias De Smet
|
01fb8851c3
|
mosdept: cram compatiblility
|
2022-05-24 11:47:58 +02:00 |
|
Harshil Patel
|
ec141dba08
|
Merge branch 'master' into umitools
|
2022-05-24 09:23:20 +01:00 |
|
Ramprasad Neethiraj
|
b4982ff6e3
|
Merge branch 'master' into rhocall
|
2022-05-24 09:41:30 +02:00 |
|
SusiJo
|
0f0d555f96
|
Merge branch 'master' into cnvkit_reference
|
2022-05-24 08:03:44 +02:00 |
|
SusiJo
|
0708f343de
|
Merge branch 'master' into cnvkit_bam
|
2022-05-24 07:49:51 +02:00 |
|
SusiJo
|
50128b0c86
|
Merge branch 'master' into cnvkit_reference
|
2022-05-24 07:49:44 +02:00 |
|
SusiJo
|
1451d62be4
|
rm md5sums for empty files
|
2022-05-24 07:38:53 +02:00 |
|
SusiJo
|
63c038ad68
|
Merge branch 'nf-core:master' into cnvkit_bam
|
2022-05-24 07:37:24 +02:00 |
|
SusiJo
|
b3e2f70651
|
Merge branch 'master' into cnvkit/antitarget
|
2022-05-24 07:36:07 +02:00 |
|
SusiJo
|
33a72367c6
|
Merge branch 'nf-core:master' into cnvkit_reference
|
2022-05-24 07:30:29 +02:00 |
|
Harshil Patel
|
a3e70777ad
|
Fix Conda tests
|
2022-05-23 22:39:12 +01:00 |
|
Harshil Patel
|
84f02a08a5
|
Update umitools/dedup module to make --output-stats optional
|
2022-05-23 22:31:09 +01:00 |
|
Sateesh Peri
|
da0ead705e
|
Merge branch 'master' into update/picard
|
2022-05-23 13:38:18 -04:00 |
|
SusiJo
|
8fec7ae321
|
added new testdata path
|
2022-05-23 19:01:46 +02:00 |
|
SusiJo
|
bbee9e3c3b
|
add new module cnvkit/reference
|
2022-05-23 18:35:50 +02:00 |
|
Thiseas Christos Lamnidis
|
37c6fb8fed
|
Merge remote-tracking branch 'upstream/master' into sexdeterrmine
|
2022-05-23 17:30:21 +02:00 |
|
Thiseas Christos Lamnidis
|
9011fc7212
|
Corrected test-datasets input
|
2022-05-23 17:08:40 +02:00 |
|
SusiJo
|
5d5eacee63
|
Merge branch 'nf-core:master' into cnvkit/antitarget
|
2022-05-23 16:52:33 +02:00 |
|
SusiJo
|
4f9d672e55
|
added new module cnvkit/antitarget
|
2022-05-23 16:52:06 +02:00 |
|
FriederikeHanssen
|
754afa9ff3
|
Merge branch 'master' into gatk_filter
|
2022-05-23 15:37:44 +02:00 |
|
Thiseas Christos Lamnidis
|
070dee0f5b
|
Use newly added test bam
|
2022-05-23 15:22:22 +02:00 |
|
Rike
|
e34dcdd8bc
|
add brackets to contains
|
2022-05-23 13:19:42 +02:00 |
|
Rike
|
dc6ad1bff6
|
add brackets to contains
|
2022-05-23 13:07:08 +02:00 |
|
Ramprasad Neethiraj
|
9fb327fec7
|
Merge branch 'master' of https://github.com/nf-core/modules into rhocall
|
2022-05-23 13:06:00 +02:00 |
|
Rike
|
093e3aafdd
|
contains
|
2022-05-23 13:04:49 +02:00 |
|
Ramprasad Neethiraj
|
06a3bff201
|
fix lint error
|
2022-05-23 12:59:48 +02:00 |
|
Rike
|
a8de9fd085
|
test path update
|
2022-05-23 12:53:36 +02:00 |
|
Rike
|
3af61cfbbc
|
fix input cardinality for index
|
2022-05-23 12:26:12 +02:00 |
|
Rike
|
a8dac59c50
|
md5sum not consistent
|
2022-05-23 12:10:50 +02:00 |
|
Rike
|
2f36a44f61
|
nf-core create-test-yml
|
2022-05-23 12:00:31 +02:00 |
|
SusiJo
|
fd31f64266
|
Merge branch 'master' into cnvkit_bam
|
2022-05-23 11:31:56 +02:00 |
|
Mahesh Binzer-Panchal
|
e06fb752c3
|
Merge branch 'master' into kat_hist
|
2022-05-23 08:52:13 +02:00 |
|
Mahesh Binzer-Panchal
|
d7c1fe1477
|
Update tests/modules/kat/hist/test.yml
Co-authored-by: Sateesh Peri <105730406+sateeshblue@users.noreply.github.com>
|
2022-05-23 08:51:49 +02:00 |
|
Mahesh Binzer-Panchal
|
b40b147004
|
Update tests/modules/kat/hist/test.yml
Co-authored-by: Sateesh Peri <105730406+sateeshblue@users.noreply.github.com>
|
2022-05-23 08:51:29 +02:00 |
|
Rike
|
cd60b4c6eb
|
add in testdata paths
|
2022-05-22 13:35:35 +02:00 |
|
Matthias De Smet
|
e13fbf423e
|
fix tests (again)
|
2022-05-22 06:54:09 +02:00 |
|
Matthias De Smet
|
cbceee9621
|
fix tests
|
2022-05-22 06:51:27 +02:00 |
|
Matthias De Smet
|
3a2de0cf6f
|
update test for wgsmetrics
|
2022-05-22 06:49:31 +02:00 |
|
Matthias De Smet
|
4da143ce62
|
add tests
|
2022-05-22 06:44:17 +02:00 |
|
Ramprasad Neethiraj
|
995bf88327
|
add stub
|
2022-05-20 17:10:09 +02:00 |
|
Ramprasad Neethiraj
|
635edc0022
|
fix typo
|
2022-05-20 17:07:42 +02:00 |
|
Ramprasad Neethiraj
|
2542c9d176
|
add tests
|
2022-05-20 16:46:19 +02:00 |
|
Mahesh Binzer-Panchal
|
2926ec0abb
|
Add mash screen
|
2022-05-20 13:23:11 +00:00 |
|
Ramprasad Neethiraj
|
c70b169f61
|
create modules
|
2022-05-20 13:34:54 +02:00 |
|
SusiJo
|
00077c36c8
|
removed unnecessary fasta for tumor_only_bam
|
2022-05-20 13:06:16 +02:00 |
|
SusiJo
|
dd2f48810a
|
Merge branch 'nf-core:master' into cnvkit_bam
|
2022-05-20 09:14:21 +02:00 |
|
SusiJo
|
3d57caa683
|
added test & corrected cram input
|
2022-05-20 09:13:27 +02:00 |
|
Rike
|
bb3e64647b
|
Merge remote-tracking branch 'origin/master' into gatk_filter
|
2022-05-18 15:52:47 +02:00 |
|
FriederikeHanssen
|
44e9cf56fa
|
Merge branch 'master' into gatk_cnnscore
|
2022-05-18 15:32:36 +02:00 |
|
Rike
|
e8221cf98e
|
Merge remote-tracking branch 'origin' into gatk_cnnscore
|
2022-05-18 14:27:25 +02:00 |
|
James A. Fellows Yates
|
965fabdd54
|
Merge branch 'master' into motus_profile
|
2022-05-18 11:25:48 +01:00 |
|
Rike
|
5ae757121f
|
Add indices and meta
|
2022-05-17 23:38:26 +02:00 |
|
Rike
|
15fba1dd7c
|
add filter variant tranches
|
2022-05-17 23:01:24 +02:00 |
|
Rike
|
afa0f2a995
|
update test
|
2022-05-17 22:53:41 +02:00 |
|
Rike
|
265fd882ca
|
update test
|
2022-05-17 19:44:48 +02:00 |
|
Rike
|
5f63904a50
|
update test
|
2022-05-17 19:37:18 +02:00 |
|
Rike
|
e0fcbb428d
|
Add CNNScoreVariants
|
2022-05-17 19:09:46 +02:00 |
|
Jose Espinosa-Carrasco
|
3614c19206
|
Merge branch 'master' into biobambam/bammerge
|
2022-05-17 15:07:37 +02:00 |
|
Nicolas Vannieuwkerke
|
6342f5b099
|
added bedtools split
|
2022-05-17 14:24:32 +02:00 |
|
Matthias De Smet
|
c5627e0274
|
fix config
|
2022-05-17 09:09:19 +02:00 |
|
Matthias De Smet
|
743e95c61b
|
fix config
|
2022-05-17 09:01:02 +02:00 |
|
Matthias De Smet
|
d3ddc2221a
|
Merge branch 'master' into biobambam/bammerge
|
2022-05-17 08:26:28 +02:00 |
|
Matthias De Smet
|
6be91ce82d
|
fix optional output detection
|
2022-05-17 08:20:47 +02:00 |
|
Subazini TK
|
79c2c529fc
|
Merge branch 'master' into hmtnote
|
2022-05-17 08:05:47 +02:00 |
|
JIANHONG OU
|
671bacb6df
|
Merge branch 'master' into motus_profile
|
2022-05-16 17:34:49 -04:00 |
|
Matthias De Smet
|
d0db186e84
|
Merge branch 'master' into biobambam/bammerge
|
2022-05-16 20:52:48 +02:00 |
|
Matthias De Smet
|
a79b9adeee
|
address review comments
|
2022-05-16 20:51:39 +02:00 |
|
Subazini TK
|
252fcb17c4
|
Update main.nf
|
2022-05-16 15:20:15 +00:00 |
|
Subazini TK
|
cb21fa0c96
|
Update main.nf
|
2022-05-16 15:20:15 +00:00 |
|
Subazini TK
|
cbae48d06d
|
Update nextflow.config
|
2022-05-16 15:20:15 +00:00 |
|
Subazini TK
|
541f403963
|
Update main.nf
|
2022-05-16 15:20:15 +00:00 |
|
Subazini TK
|
69243db3d7
|
Update test.yml
|
2022-05-16 15:20:15 +00:00 |
|
Subazini TK
|
c8c6fdd2e3
|
Update main.nf
|
2022-05-16 15:20:15 +00:00 |
|
Subazini TK
|
fb66e8ba97
|
Update test.yml
|
2022-05-16 15:20:15 +00:00 |
|
Subazini TK
|
f0713f4723
|
Update test.yml
|
2022-05-16 15:20:15 +00:00 |
|
Subazini TK
|
060d33f2c3
|
Update test.yml
|
2022-05-16 15:20:15 +00:00 |
|
Subazini TK
|
df8f1eae69
|
Update test.yml
|
2022-05-16 15:20:15 +00:00 |
|
sysbiocoder
|
31fc8b560f
|
hmtnote
|
2022-05-16 15:20:15 +00:00 |
|
Matthias De Smet
|
af69ea749d
|
add module: biobambam/bammerge
|
2022-05-16 14:39:58 +02:00 |
|
Veit Schwämmle
|
74a1c1400e
|
Merge branch 'master' into maxquant
|
2022-05-16 13:26:35 +02:00 |
|
Jasmin F
|
982c9183fa
|
Merge branch 'master' into antismashlite
|
2022-05-16 11:42:44 +02:00 |
|
Jasmin F
|
adcfae6cd4
|
Merge branch 'master' into antismashlite
|
2022-05-16 10:38:01 +02:00 |
|
Rike
|
eb841d4ea0
|
revert markduplciatespark changes
|
2022-05-16 10:33:01 +02:00 |
|
FriederikeHanssen
|
8b4d021189
|
Merge branch 'master' into gatk_426
|
2022-05-16 09:50:13 +02:00 |
|
Matthias De Smet
|
5a2e303522
|
add PE sorted test
|
2022-05-13 19:16:50 +02:00 |
|
Taniguti
|
ac7fe89a78
|
Merge branch 'master' into haplocheck
|
2022-05-13 11:24:10 -03:00 |
|
Matthias De Smet
|
04f82d4d34
|
fix test name
|
2022-05-13 15:32:14 +02:00 |
|
JIANHONG OU
|
fadb83cf44
|
Merge branch 'master' into motus_profile
|
2022-05-13 09:30:20 -04:00 |
|
Matthias De Smet
|
cbc47767f7
|
add sort option to bowtie2
|
2022-05-13 15:26:41 +02:00 |
|
Nicolas Vannieuwkerke
|
a72f06dfe8
|
removed versions checksum
|
2022-05-13 14:27:59 +02:00 |
|
nvnieuwk
|
1d4862ba60
|
Merge branch 'master' into new-module-gatk4/splitintervals
|
2022-05-13 13:47:20 +02:00 |
|
Nicolas Vannieuwkerke
|
8a17b6dd0e
|
added gatk4/splitintervals
|
2022-05-13 13:46:34 +02:00 |
|
Chris Cheshire
|
ea55129ba3
|
Removed version file checksums
|
2022-05-13 12:20:41 +01:00 |
|
Chris Cheshire
|
9f6a1ae4a4
|
Merge branch 'master' into bowtie2-test-fix
|
2022-05-13 12:05:48 +01:00 |
|
Chris Cheshire
|
d816f2bc5d
|
Reactivated all tests
|
2022-05-13 12:01:16 +01:00 |
|
Taniguti
|
4728b2bcd2
|
Merge branch 'master' into haplocheck
|
2022-05-13 07:49:55 -03:00 |
|
Lucas Taniguti
|
c1ed4e21be
|
tests: add haplocheck tests
|
2022-05-13 07:42:34 -03:00 |
|
Mahesh Binzer-Panchal
|
00826dc2e9
|
Merge branch 'master' into genomescope2
|
2022-05-13 11:28:47 +02:00 |
|
Mahesh Binzer-Panchal
|
5df0bcf1be
|
Update tests/modules/genomescope2/test.yml
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
|
2022-05-13 11:27:42 +02:00 |
|
James A. Fellows Yates
|
2eebab4f35
|
Update tests/modules/motus/profile/test.yml
|
2022-05-12 20:55:54 +01:00 |
|
James A. Fellows Yates
|
8dd711aba2
|
Update tests/modules/motus/profile/main.nf
|
2022-05-12 20:08:37 +01:00 |
|
FriederikeHanssen
|
868150e1af
|
Merge branch 'master' into gatk_426
|
2022-05-12 19:33:07 +02:00 |
|
Rike
|
99880654bf
|
add output default bam
|
2022-05-12 18:06:15 +02:00 |
|
Rike
|
8792d102ee
|
fix test input
|
2022-05-12 17:37:06 +02:00 |
|
Rike
|
a694267b4b
|
fix empty index input
|
2022-05-12 17:01:03 +02:00 |
|
Mahesh Binzer-Panchal
|
308ab8801d
|
Merge branch 'master' into kat_hist
|
2022-05-12 16:52:05 +02:00 |
|
Rike
|
b3bd55da76
|
getpileupsummaries requires intervals files
|
2022-05-12 16:51:17 +02:00 |
|
Rike
|
15fbf21b28
|
double tmpdir args removed, porb leftover after massive refactor where we decided to make it mandatory everywhere
|
2022-05-12 16:16:53 +02:00 |
|
Rike
|
fef5434c4c
|
Update md5sums
|
2022-05-12 16:07:12 +02:00 |
|
Jasmin F
|
85b3c2bcf2
|
Apply suggestions from code review
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-12 15:28:19 +02:00 |
|
James A. Fellows Yates
|
3c02e6056c
|
Merge branch 'master' into antismashlite
|
2022-05-12 14:53:52 +02:00 |
|
jasmezz
|
d2ef476321
|
Fix Prettier linting error
|
2022-05-12 12:19:50 +02:00 |
|
jasmezz
|
37cc6f250b
|
Fixed test.yml
|
2022-05-12 12:14:19 +02:00 |
|
Chris Cheshire
|
90c67794bf
|
Added extra tests but error with collection
|
2022-05-12 10:01:33 +01:00 |
|
jasmezz
|
bd4b70439b
|
Streamlined some output channels, formatted tests main.nf
|
2022-05-12 10:56:48 +02:00 |
|
Robert A. Petit III
|
8b6e1aff38
|
Merge branch 'master' into rp3-add-snippy
|
2022-05-11 12:28:27 -06:00 |
|
Robert A. Petit III
|
7ced6e20de
|
make prettier
|
2022-05-11 18:00:36 +00:00 |
|
Matthias De Smet
|
dcf9c07fc9
|
Merge branch 'master' into update/bowtie2-align
|
2022-05-11 19:08:23 +02:00 |
|
Moritz E. Beber
|
98d8a741ec
|
tests: add missing paths to config
|
2022-05-11 18:17:27 +02:00 |
|
Moritz E. Beber
|
888620063b
|
tests: delete settings for conda
|
2022-05-11 17:44:49 +02:00 |
|
Moritz E. Beber
|
b2dbaa9930
|
refactor: rename module
|
2022-05-11 17:33:45 +02:00 |
|
Moritz E. Beber
|
23091aabda
|
refactor: move files to custom section
|
2022-05-11 17:33:45 +02:00 |
|
Moritz E. Beber
|
a83dd33a7e
|
tests: use remove settings file
|
2022-05-11 17:33:45 +02:00 |
|
Moritz E. Beber
|
e4551a9ab3
|
refactor: always output settings
|
2022-05-11 17:33:45 +02:00 |
|
Moritz E. Beber
|
64ff23f3c1
|
feat: add module that verifies NCBI settings
|
2022-05-11 17:33:45 +02:00 |
|
Mahesh Binzer-Panchal
|
0199d0efd2
|
Merge branch 'master' into kat_hist
|
2022-05-11 16:56:29 +02:00 |
|
Jasmin F
|
853e3ec087
|
Remove commented code
Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
|
2022-05-11 15:56:10 +02:00 |
|
Matthias De Smet
|
94e8c3a882
|
Update tests/modules/bowtie2/align/test.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2022-05-11 13:56:03 +02:00 |
|
Matthias De Smet
|
0d00452eca
|
Update tests/modules/bowtie2/align/test.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2022-05-11 13:55:45 +02:00 |
|
Matthias De Smet
|
dcffd93875
|
Merge branch 'master' into update/bowtie2-align
|
2022-05-11 13:34:24 +02:00 |
|
CMGG ICT Team
|
3ae8cbfad7
|
bowtie2: remove code duplication
|
2022-05-11 13:32:56 +02:00 |
|
Moritz E. Beber
|
0cdf7767a7
|
refactor: require NCBI user settings always
|
2022-05-11 13:02:52 +02:00 |
|
Moritz E. Beber
|
eae7161a32
|
tests: add settings input or not and test all branches
|
2022-05-11 12:47:54 +02:00 |
|
Mahesh Binzer-Panchal
|
fd579ebbb3
|
Merge branch 'master' into kat_hist
|
2022-05-11 12:43:11 +02:00 |
|
Mahesh Binzer-Panchal
|
00fcdd0cba
|
Merge branch 'master' into genomescope2
|
2022-05-11 12:42:39 +02:00 |
|
Mahesh Binzer-Panchal
|
d54cf467f4
|
Update outputs and test data set
|
2022-05-11 10:42:17 +00:00 |
|
Harshil Patel
|
7be7f404d5
|
Merge branch 'master' into refactor-prefetch
|
2022-05-11 11:28:02 +01:00 |
|
jasmezz
|
2b746abfbe
|
Fix Prettier linting issue
|
2022-05-11 12:09:52 +02:00 |
|
jasmezz
|
5d76f1c7ff
|
Add fasta/gff input option
|
2022-05-11 12:06:02 +02:00 |
|
Jasmin F
|
9cce4a00b2
|
Merge branch 'nf-core:master' into antismashlite
|
2022-05-11 12:03:30 +02:00 |
|
Mahesh Binzer-Panchal
|
0774704038
|
Merge branch 'master' into genomescope2
|
2022-05-11 11:38:36 +02:00 |
|
Robert A. Petit III
|
56e94f625e
|
remove empty file md5
|
2022-05-10 21:47:11 +00:00 |
|
Robert A. Petit III
|
44e13ae439
|
add module for snippy
|
2022-05-10 21:31:43 +00:00 |
|
Mahesh Binzer-Panchal
|
7a16ece747
|
Change md5sum to contains
|
2022-05-10 15:13:25 +00:00 |
|
Mahesh Binzer-Panchal
|
cd32c7f744
|
Merge branch 'master' into kat_hist
|
2022-05-10 17:03:00 +02:00 |
|
Mahesh Binzer-Panchal
|
9b4923dcd5
|
Change test files
|
2022-05-10 15:02:37 +00:00 |
|
Mahesh Binzer-Panchal
|
b875cfb744
|
Merge branch 'master' into kat_hist
|
2022-05-10 14:36:18 +02:00 |
|
Praveen Raj S
|
237971cd15
|
Merge branch 'master' into master
|
2022-05-10 14:35:41 +02:00 |
|
Nicolas Vannieuwkerke
|
b7134855e4
|
Small update on the output channels
|
2022-05-10 12:34:52 +02:00 |
|
Moritz E. Beber
|
1b228835e9
|
refactor: require settings input always
|
2022-05-10 12:29:42 +02:00 |
|
Moritz E. Beber
|
145e2f80e9
|
tests: run prefetch with and without given settings
|
2022-05-10 12:16:57 +02:00 |
|
Nicolas Vannieuwkerke
|
3a064b0a99
|
Split the output to different channels
|
2022-05-10 12:05:42 +02:00 |
|
Nicolas Vannieuwkerke
|
6008619603
|
test issue fix?
|
2022-05-10 10:20:54 +02:00 |
|
Nicolas Vannieuwkerke
|
96c3f895b9
|
test issue fix?
|
2022-05-10 10:19:13 +02:00 |
|
Nicolas Vannieuwkerke
|
42fbf80c72
|
Fixed a test issue with wrong md5sum
|
2022-05-10 09:57:49 +02:00 |
|
Nicolas Vannieuwkerke
|
f0e8f6ce4d
|
Linting
|
2022-05-10 09:36:54 +02:00 |
|
Nicolas Vannieuwkerke
|
e5d091ad4b
|
Merge branch 'new-module-rtg/vcfeval' of github.com:nvnieuwk/modules into new-module-rtg/vcfeval
|
2022-05-10 09:35:44 +02:00 |
|
Nicolas Vannieuwkerke
|
c69d5cc23e
|
Added evaluation-regions and adjusted the output to now contain all output (and not only the summary)
|
2022-05-10 09:35:42 +02:00 |
|
nvnieuwk
|
95103fbd79
|
Merge branch 'master' into new-module-rtg/vcfeval
|
2022-05-10 09:06:34 +02:00 |
|
Praveen Raj S
|
459a2d1759
|
Merge branch 'master' into master
|
2022-05-09 22:16:59 +02:00 |
|
Mahesh Binzer-Panchal
|
f65d896f57
|
create genomescope2 module
|
2022-05-09 15:09:15 +00:00 |
|
Mahesh Binzer-Panchal
|
705ad7c3a1
|
Merge branch 'master' into meryl_unionsum
|
2022-05-09 16:20:01 +02:00 |
|
nvnieuwk
|
aceb5220cf
|
Merge branch 'master' into new-module-rtg/vcfeval
|
2022-05-09 16:18:00 +02:00 |
|
Mahesh Binzer-Panchal
|
83a266ea70
|
Merge branch 'master' into meryl_unionsum
|
2022-05-09 16:16:08 +02:00 |
|
FriederikeHanssen
|
adc4ff868c
|
Merge branch 'master' into samtools_convert
|
2022-05-09 16:15:24 +02:00 |
|
nvnieuwk
|
4b8bd9ebf9
|
Merge branch 'master' into new-module-rtg/vcfeval
|
2022-05-09 15:51:31 +02:00 |
|
Mahesh Binzer-Panchal
|
da93beaf60
|
Update pytests
|
2022-05-09 13:50:49 +00:00 |
|
Nicolas Vannieuwkerke
|
f6262b4a10
|
fixed some issues
|
2022-05-09 15:47:07 +02:00 |
|
Mahesh Binzer-Panchal
|
8d86988632
|
Merge branch 'master' into meryl/histogram
|
2022-05-09 15:39:32 +02:00 |
|
nvnieuwk
|
d6dd4c2e2d
|
Update tests/modules/rtgtools/vcfeval/test.yml
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
|
2022-05-09 15:35:16 +02:00 |
|
Rike
|
ef5f145342
|
Generalize Bam2Cram do either conversion
|
2022-05-09 15:22:54 +02:00 |
|
Annick Renevey
|
ac3034696b
|
update md5sum
|
2022-05-09 15:19:16 +02:00 |
|
Mahesh Binzer-Panchal
|
f0f414d519
|
Update pytests
|
2022-05-09 13:00:10 +00:00 |
|
Annick Renevey
|
eed874ace7
|
update arriba tests
|
2022-05-09 14:55:59 +02:00 |
|
Mahesh Binzer-Panchal
|
6621768550
|
Update pytest outputs
|
2022-05-09 12:54:31 +00:00 |
|
Mahesh Binzer-Panchal
|
ce97c87b5d
|
Merge branch 'master' into meryl_unionsum
|
2022-05-09 13:51:55 +02:00 |
|
Mahesh Binzer-Panchal
|
7a5d5f5766
|
Merge branch 'master' into kat_hist
|
2022-05-09 13:18:18 +02:00 |
|
Mahesh Binzer-Panchal
|
a43bc940d6
|
Add suggestions from code review
|
2022-05-09 11:15:14 +00:00 |
|
Mahesh Binzer-Panchal
|
129f57ccd9
|
Add meryl histogram
|
2022-05-09 08:50:28 +00:00 |
|
Mahesh Binzer-Panchal
|
ad4f8389cb
|
Add meryl unionsum
|
2022-05-09 08:33:21 +00:00 |
|
Mahesh Binzer-Panchal
|
32b0fdc9d9
|
Merge branch 'master' into meryl_count
|
2022-05-09 10:05:28 +02:00 |
|
Mahesh Binzer-Panchal
|
9ebeb6a702
|
Update test
|
2022-05-09 08:05:07 +00:00 |
|
Matthias De Smet
|
3dc18365f6
|
Merge branch 'master' into new-module-rtg/vcfeval
|
2022-05-09 10:04:29 +02:00 |
|
Mahesh Binzer-Panchal
|
4591ea2205
|
atomize
|
2022-05-09 07:58:58 +00:00 |
|
Matthias De Smet
|
2b91985aa0
|
Merge branch 'master' into new-module-rtg/vcfeval
|
2022-05-09 09:43:48 +02:00 |
|
Nicolas Vannieuwkerke
|
d18af7358a
|
Moved untarring the genome sdf folder to the test itself
|
2022-05-09 09:20:42 +02:00 |
|
Lucpen
|
bdaed264a7
|
Merge branch 'master' into correcting_stubs
|
2022-05-09 08:54:22 +02:00 |
|
James A. Fellows Yates
|
8a83ad0518
|
Merge branch 'master' into motus_profile
|
2022-05-09 08:16:16 +02:00 |
|
Matthias De Smet
|
0752b82c9f
|
Merge branch 'master' into update/snapaligner
|
2022-05-06 18:57:37 +02:00 |
|
Matthias De Smet
|
dd458e3388
|
fix tags
|
2022-05-06 18:57:17 +02:00 |
|
Mahesh Binzer-Panchal
|
67481c6d54
|
Start Meryl count
|
2022-05-06 15:04:04 +00:00 |
|
Mahesh Binzer-Panchal
|
1e55ad987f
|
Merge branch 'master' into kat_hist
|
2022-05-06 16:35:51 +02:00 |
|
nvnieuwk
|
5153e10840
|
Merge branch 'master' into new-module-rtg/vcfeval
|
2022-05-06 16:19:17 +02:00 |
|
Lucpen
|
8e5fda3b10
|
Merge branch 'master' into correcting_stubs
|
2022-05-06 15:37:08 +02:00 |
|
Lucpen
|
971a17a3ab
|
fix datatest for stubs
|
2022-05-06 15:34:18 +02:00 |
|
Mahesh Binzer-Panchal
|
7a85760d08
|
remove 'auto' test
|
2022-05-06 13:33:27 +00:00 |
|
Lucpen
|
0fa36e6777
|
fix added correct entry workflow in test.yml
|
2022-05-06 15:26:34 +02:00 |
|
JIANHONG OU
|
9b50036e9b
|
add test_bam and -m parameter for motus_profile
|
2022-05-06 08:56:42 -04:00 |
|
JIANHONG OU
|
c301a406dd
|
Merge branch 'nf-core:master' into motus_profile
|
2022-05-06 08:33:43 -04:00 |
|
Nicolas Vannieuwkerke
|
84b354ab6a
|
Added the rtgtools/vcfeval module
|
2022-05-06 14:23:40 +02:00 |
|
JIANHONG OU
|
26d5b4da72
|
Update tests/modules/motus/profile/main.nf
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-05-06 08:19:54 -04:00 |
|
Matthias De Smet
|
3930ba227b
|
merge snapaligner modes into one
|
2022-05-06 14:10:44 +02:00 |
|
Mahesh Binzer-Panchal
|
a9f23bb477
|
Merge branch 'master' into busco
|
2022-05-06 13:49:01 +02:00 |
|
Mahesh Binzer-Panchal
|
35c5828f43
|
Add --auto-lineage option and remove single_end
Co-authored-by: Jill V. Hagey, PhD <jvhagey@gmail.com>
|
2022-05-06 11:48:21 +00:00 |
|
Jose Espinosa-Carrasco
|
035655e35d
|
Merge branch 'master' into modules/md5sum
|
2022-05-06 12:34:14 +02:00 |
|
Mahesh Binzer-Panchal
|
c19e7da59d
|
Apply suggestions from code review
Remove versions md5sum
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
|
2022-05-06 10:55:48 +02:00 |
|
Matthias De Smet
|
09e729ad41
|
added sha256sum
|
2022-05-06 10:28:14 +02:00 |
|
Mahesh Binzer-Panchal
|
d83281eac9
|
Merge branch 'master' into kat_hist
|
2022-05-06 10:02:44 +02:00 |
|
Mahesh Binzer-Panchal
|
9194fb845e
|
Add module kat hist
|
2022-05-06 07:54:10 +00:00 |
|
Matthias De Smet
|
853b623969
|
new module: md5sum
|
2022-05-06 09:20:40 +02:00 |
|
Ramprasad Neethiraj
|
db56d80060
|
Merge branch 'master' of https://github.com/nf-core/modules into feat/update_cnvpytor
|
2022-05-06 00:10:28 +02:00 |
|
Ramprasad Neethiraj
|
e4e4f8090c
|
combine multiple pytor
|
2022-05-05 23:59:12 +02:00 |
|
JIANHONG OU
|
b8efa2ae7c
|
Merge branch 'master' into motus_profile
|
2022-05-05 13:41:54 -04:00 |
|
JIANHONG OU
|
fb5c5d310a
|
update motus module.
|
2022-05-05 13:38:46 -04:00 |
|
Sateesh Peri
|
faf45edc5e
|
Merge branch 'master' into busco
|
2022-05-05 12:48:39 -04:00 |
|
Ramprasad Neethiraj
|
db2acba71b
|
Merge branch 'master' into feat/update_cnvpytor
|
2022-05-05 17:31:10 +02:00 |
|
Sateesh Peri
|
3414d3aba3
|
Merge branch 'master' into busco
|
2022-05-05 10:08:55 -04:00 |
|
JIANHONG OU
|
c8f2c44e22
|
Merge remote-tracking branch 'origin' into motus_profile
|
2022-05-05 09:41:13 -04:00 |
|
JIANHONG OU
|
a8bc386ea3
|
Merge branch 'master' into motus_downloaddb
|
2022-05-05 09:36:25 -04:00 |
|
JIANHONG OU
|
566c11dacc
|
Merge branch 'master' into motus_downloaddb
|
2022-05-05 08:28:10 -04:00 |
|
Francesco L
|
97f318eea6
|
Merge branch 'master' into firstbranch
|
2022-05-05 14:25:00 +02:00 |
|
Carpanzano
|
a700a9c15e
|
Merge branch 'firstbranch' of github.com:carpanz/modules into firstbranch
|
2022-05-05 13:52:45 +02:00 |
|
Carpanzano
|
9083d3bb3d
|
integrating suggestions from PR comments, including recovery of tests for kronadb and more detailed explanation of input database in yml file
|
2022-05-05 13:51:41 +02:00 |
|
jasmezz
|
24b9c397dd
|
Apply suggestions from code review + add support for GFF annotations
|
2022-05-05 13:14:39 +02:00 |
|
MaxUlysse
|
40dd662fd2
|
update ensemblvep and snpeff modules
|
2022-05-05 12:57:14 +02:00 |
|
James A. Fellows Yates
|
e60c6f9bfd
|
Merge branch 'master' into firstbranch
|
2022-05-05 10:57:27 +02:00 |
|
jasmezz
|
6a7aec8b41
|
Remove prokka test workflow
|
2022-05-05 10:22:02 +02:00 |
|
Mahesh Binzer-Panchal
|
58ea709f7f
|
Merge branch 'master' into busco
|
2022-05-05 09:34:14 +02:00 |
|
ljmesi
|
888e122f05
|
Merge branch 'add_compression_to_bam2fq' of https://github.com/Genomic-Medicine-Linkoping/modules into add_compression_to_bam2fq
|
2022-05-05 08:32:48 +02:00 |
|
ljmesi
|
be8ce6de2a
|
Remove variable md5sum from the tests
|
2022-05-05 08:32:45 +02:00 |
|
James A. Fellows Yates
|
35b5ba673f
|
Merge branch 'master' into motus_downloaddb
|
2022-05-04 20:58:08 +02:00 |
|
Lauri Mesilaakso
|
e757966566
|
Merge branch 'master' into add_compression_to_bam2fq
|
2022-05-04 18:41:36 +03:00 |
|
Carpanzano
|
38faf040ec
|
missing change in ext.args config
|
2022-05-04 16:54:15 +02:00 |
|
Nicolas Vannieuwkerke
|
3c07602443
|
Added the version.yml
|
2022-05-04 16:51:09 +02:00 |
|
Carpanzano
|
e7b92a7616
|
fixing md5sum changes
|
2022-05-04 16:43:22 +02:00 |
|
Simone Carpanzano
|
162f8edf54
|
Merge branch 'master' into firstbranch
|
2022-05-04 16:35:25 +02:00 |
|
Carpanzano
|
6b8ca501ed
|
fixing suggestions from PR
|
2022-05-04 16:34:52 +02:00 |
|
Nicolas Vannieuwkerke
|
f875aec46b
|
Split the module into two parts
|
2022-05-04 15:29:48 +02:00 |
|
Mahesh Binzer-Panchal
|
5986a3efbf
|
Merge branch 'master' into busco
|
2022-05-04 15:09:54 +02:00 |
|
Nicolas Vannieuwkerke
|
3c66138672
|
Linting issue + removed the contains lines
|
2022-05-04 14:49:17 +02:00 |
|
Nicolas Vannieuwkerke
|
5889d6c923
|
Another possible fix for the pytest issues
|
2022-05-04 14:46:15 +02:00 |
|
Nicolas Vannieuwkerke
|
583ea13800
|
Another try to fix the pytest issues
|
2022-05-04 14:22:55 +02:00 |
|
Nicolas Vannieuwkerke
|
17dbd2bb82
|
Linting issue fixed
|
2022-05-04 14:18:56 +02:00 |
|
Nicolas Vannieuwkerke
|
c1393bf999
|
Possible fix for the pytest errors?
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2022-05-04 14:14:01 +02:00 |
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nvnieuwk
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c9808cb97f
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Merge branch 'master' into new-module-hap.py
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2022-05-04 14:01:02 +02:00 |
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Nicolas Vannieuwkerke
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37338ecee3
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Finished the module
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2022-05-04 14:00:02 +02:00 |
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Mahesh Binzer-Panchal
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f65abe1e9a
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Prettier
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2022-05-04 11:54:51 +00:00 |
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Ramprasad Neethiraj
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6541e151bc
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Merge branch 'master' into feat/update_cnvpytor
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2022-05-04 13:54:46 +02:00 |
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Mahesh Binzer-Panchal
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73a8df9522
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Fix no genes found test and update test.yml
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2022-05-04 11:52:42 +00:00 |
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Nicolas Vannieuwkerke
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c517ce9b4d
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Added the module and some simple testing
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2022-05-04 13:42:12 +02:00 |
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Mahesh Binzer-Panchal
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8df20218bf
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Add more tests and capture summaries
Co-authored-by: Jill V. Hagey, PhD <jvhagey@gmail.com>
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2022-05-04 09:22:43 +00:00 |
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Mahesh Binzer-Panchal
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3bb0711b06
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Merge branch 'master' into busco
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2022-05-04 09:15:46 +02:00 |
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Lauri Mesilaakso
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530b5ac661
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-04 09:53:46 +03:00 |
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Chris Cheshire
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79e64cdd1f
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Merge branch 'master' into expected_error_fix
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2022-05-03 22:21:28 +01:00 |
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jasmezz
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fa9f0753de
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Apply review suggestions + add stub for prokka test workflow
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2022-05-03 17:30:16 +02:00 |
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Lauri Mesilaakso
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12f79c2101
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 17:03:02 +03:00 |
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ljmesi
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a39fa4e003
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Fix checksum for one file
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2022-05-03 15:47:49 +02:00 |
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Mahesh Binzer-Panchal
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636abad8f1
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Merge branch 'master' into busco
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2022-05-03 15:38:25 +02:00 |
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Nicolas Vannieuwkerke
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96d4a31cc1
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Moved the BED file to the main tuple
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2022-05-03 15:31:05 +02:00 |
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Mahesh Binzer-Panchal
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5f4781adaa
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Merge branch 'master' into busco
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2022-05-03 15:27:10 +02:00 |
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Mahesh Binzer-Panchal
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57db28386e
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Support batch fasta analysis
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2022-05-03 13:26:49 +00:00 |
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ljmesi
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034352dbbf
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Merge branch 'add_compression_to_bam2fq' of https://github.com/Genomic-Medicine-Linkoping/modules into add_compression_to_bam2fq
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2022-05-03 15:18:12 +02:00 |
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ljmesi
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5510ea39fe
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Test --no-name to solve inconsistent checksums
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2022-05-03 15:18:09 +02:00 |
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Ramprasad Neethiraj
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26311aba2a
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fix minor errors
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2022-05-03 15:04:37 +02:00 |
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Ramprasad Neethiraj
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be085c0173
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Merge branch 'master' of https://github.com/nf-core/modules into feat/update_cnvpytor
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2022-05-03 14:55:42 +02:00 |
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Ramprasad Neethiraj
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19cfb4e951
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update meta files
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2022-05-03 14:53:56 +02:00 |
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Ramprasad Neethiraj
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46e5752b82
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update tests
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2022-05-03 14:32:45 +02:00 |
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Lauri Mesilaakso
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a65e76e3dd
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 14:30:54 +03:00 |
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Chris Cheshire
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6f35537d40
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Merge branch 'master' into expected_error_fix
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2022-05-03 12:21:51 +01:00 |
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Chris Cheshire
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829183ee84
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Merge branch 'master' into rp3-add-shigatyper
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2022-05-03 12:16:54 +01:00 |
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Chris Cheshire
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6015478b72
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Merge branch 'master' into add-slimfastq
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2022-05-03 12:11:19 +01:00 |
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Chris Cheshire
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d7fb969a74
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Merge branch 'master' into rp3-add-shigatyper
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2022-05-03 12:10:23 +01:00 |
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Chris Cheshire
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40e6bd9dc1
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bowtie2|fix tags error
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2022-05-03 12:07:04 +01:00 |
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Chris Cheshire
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0f1ee7e50d
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bowtie2|test fixes
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2022-05-03 12:04:51 +01:00 |
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Chris Cheshire
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61f68913fe
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Merge branch 'master' into expected_error_fix
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2022-05-03 11:49:35 +01:00 |
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Chris Cheshire
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768073be63
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bowtie2|Added support for large indexes
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2022-05-03 11:46:19 +01:00 |
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Mahesh Binzer-Panchal
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ddbe6e8f40
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Merge branch 'master' into busco
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2022-05-03 10:48:03 +02:00 |
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Mahesh Binzer-Panchal
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9a72548ee1
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Update busco module
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2022-05-03 08:42:56 +00:00 |
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Lauri Mesilaakso
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6367c6a1ad
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 11:41:25 +03:00 |
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nvnieuwk
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f85787b19e
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Merge branch 'master' into vardict-java
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2022-05-03 10:17:04 +02:00 |
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Lauri Mesilaakso
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773e6f8e93
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 11:13:55 +03:00 |
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ljmesi
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59d6e6e1dd
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Add updated md5sums
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2022-05-03 09:56:50 +02:00 |
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Ramprasad Neethiraj
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6f787aea71
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Merge branch 'master' into adding_stub_to_modules
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2022-05-03 09:43:16 +02:00 |
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Nicolas Vannieuwkerke
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9127f92ddd
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Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java
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2022-05-03 08:29:50 +02:00 |
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Nicolas Vannieuwkerke
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9a10e5beb5
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Added the missing inputs in meta.yml + correct notation
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2022-05-03 08:29:46 +02:00 |
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Matthias De Smet
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1687bfcb85
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Merge branch 'master' into add-slimfastq
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2022-05-03 08:22:49 +02:00 |
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Matthias De Smet
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a67c06af81
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Merge branch 'master' into vardict-java
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2022-05-03 08:22:19 +02:00 |
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Jill V. Hagey, PhD
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23cfb5dd42
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Update test.yml
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2022-05-02 18:38:48 -04:00 |
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Jill V. Hagey, PhD
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db9681029c
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Update test.yml
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2022-05-02 18:27:01 -04:00 |
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Jill V. Hagey, PhD
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7b0d6f96fd
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Update test.yml
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2022-05-02 18:20:54 -04:00 |
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Jill V. Hagey, PhD
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e5d7c80bb5
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Update test.yml
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2022-05-02 18:13:14 -04:00 |
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Moritz E. Beber
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16aa3915e3
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feat: add module for slimfastq
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2022-05-02 23:16:59 +02:00 |
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Carpanzano
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d2e1408b0f
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updated content for html file in test yml
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2022-05-02 18:44:05 +02:00 |
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carpanz
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e8b2445878
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updated file location in test yml
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2022-05-02 18:43:20 +02:00 |
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Carpanzano
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1deb789502
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synced withName ext.args with process name
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2022-05-02 18:39:45 +02:00 |
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Carpanzano
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5136ed29c4
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removed include and changed process name due to expected folder name before tokenize
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2022-05-02 18:38:59 +02:00 |
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Ramprasad Neethiraj
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3194729f82
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Merge branch 'master' into adding_stub_to_modules
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2022-05-02 18:31:55 +02:00 |
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Jill V. Hagey, PhD
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99a8711997
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Update tests/modules/srst2/srst2/test.yml
Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com>
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2022-05-02 12:26:56 -04:00 |
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Carpanzano
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32b8f3f612
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adding contain for html output in test yml
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2022-05-02 18:21:26 +02:00 |
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carpanz
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6e83196634
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updating test yml after removing kronadb from test
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2022-05-02 18:20:36 +02:00 |
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Carpanzano
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b0a2d36ec1
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removing kronadb module from testing ktimporttaxonomy test - NB: temporarily using test db while testdb is added to test-datasets
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2022-05-02 18:16:08 +02:00 |
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Sateesh Peri
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c56b371713
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Merge branch 'master' into srst2/srst2
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2022-05-02 12:13:11 -04:00 |
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jasmezz
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a992a0207e
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Merge branch 'antismashlite' of github.com:jasmezz/modules into antismashlite
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2022-05-02 17:58:52 +02:00 |
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Jasmin F
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b8386c42a7
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Merge branch 'nf-core:master' into antismashlite
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2022-05-02 17:58:19 +02:00 |
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jasmezz
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d19e65d2a2
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Merge branch 'antismashlite' of github.com:jasmezz/modules into antismashlite
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2022-05-02 17:56:23 +02:00 |
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jasmezz
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35cc8152b8
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Fix missing test input
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2022-05-02 17:55:39 +02:00 |
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Simone Carpanzano
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3d9c8a6bb1
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Merge branch 'master' into firstbranch
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2022-05-02 17:43:33 +02:00 |
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Carpanzano
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c9ab26ba8e
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synced name of report as in test config
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2022-05-02 17:41:55 +02:00 |
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jvhagey
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cd45dc1550
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linting test.yml
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2022-05-02 11:38:39 -04:00 |
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