1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-27 10:09:56 +00:00
Commit graph

807 commits

Author SHA1 Message Date
Edmund Miller
a6975cdd4e
fix(ganymede): large => high
Co-authored-by: drpatelh <drpatelh@users.noreply.github.com>
2021-03-22 12:42:56 -05:00
Edmund Miller
34ccce9531
fix(ganymede): Add process resources
Trimgalore though it can be a bottom neck, doesn't require the 1 big
memory node we have and can be run on the genomics queue.
2021-03-21 21:47:59 -05:00
Edmund Miller
4570718b12
fix(ganymede): Add TMPDIR and SINGULARITY_CACHEDIR env variables 2021-03-21 21:45:39 -05:00
Asaf Peer
30c864e112 added JAX conf 2021-03-21 06:49:11 -04:00
ameyner2
059d353a1e Removed Conda, added automount Singularity 2021-03-18 12:31:56 +00:00
Rike
6221b67bcf Give Strelka a complete compute node 2021-03-18 11:11:02 +01:00
Rike
b1846af9d3 reduce mapping resource further to compute node 2021-03-18 11:10:00 +01:00
FriederikeHanssen
67c93a4743
Update conf/pipeline/sarek/cfc.config
Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
2021-03-18 11:06:38 +01:00
Rike
b70097e495 remove new line 2021-03-17 15:46:18 +01:00
ameyner2
d4cd07c646 Typo in beforescript 2021-03-17 09:21:26 +00:00
Noirot Céline
7e9f83ee81 Add IFB config 2021-03-16 15:54:19 +01:00
ameyner2
cfe13fe6c1 Fixed typo & added singularity tmpdir 2021-03-15 15:42:30 +00:00
Ashley S Doane
e7f8189dfc
Create wcm.config 2021-03-11 13:52:11 -05:00
Rike
bb124a9be8 Reduce vc to run on compute 2021-03-11 16:11:41 +01:00
FriederikeHanssen
79ddbe1fea Add missing bracket 2021-03-11 09:29:03 +01:00
FriederikeHanssen
0057132e02 remove check_reource statement 2021-03-11 09:27:08 +01:00
phue
da3bd2693d cbe: add rapid qos
and update config url
2021-03-10 11:26:01 +01:00
FriederikeHanssen
eb9012919c Set values for processes with max_mem/max_cpus 2021-03-10 11:16:18 +01:00
Graeme Grimes
babeccd020
changed # to // for comments 2021-03-04 16:45:21 +00:00
ameynert
6f09a233f0
Added singularity module 2021-03-04 14:46:23 +00:00
ameynert
3af2c6409f
Initial commit of eddie.config 2021-03-03 09:59:16 +00:00
maxibor
286e18b80c update shh config after CDAG departure 2021-02-17 10:22:05 +01:00
drpatelh
01a4f8559e Update links to be consistent 2021-02-16 13:17:16 +00:00
Harshil Patel
6ffaf922c5
Update genomes.config 2021-02-16 10:28:32 +00:00
Marc Hoeppner
1f2fce00aa Updating the CCGA DX profile to new storage system 2021-02-16 09:02:16 +01:00
Harshil Patel
4de0855218
Update genomes.config 2021-02-15 18:48:03 +00:00
drpatelh
9d500cf679 Reorder params 2021-02-15 17:02:26 +00:00
drpatelh
f283dfb2dc Add ARTIC primer sets to genome config 2021-02-15 16:58:30 +00:00
James Fellows Yates
537f52a640 Add MPI-EVA profile 2021-02-14 17:50:20 +01:00
ggabernet
9b5bcbd434 update aws clipath 2021-02-09 22:06:59 +01:00
ggabernet
0909708b97 update with upstream 2021-02-09 22:01:27 +01:00
James A. Fellows Yates
86566ddd3b
Merge pull request #204 from jfy133/master
Add a 'big_data' profile for eager @ SHH
2021-02-04 15:07:52 +01:00
James A. Fellows Yates
e32f1e46ff
Update shh.config 2021-02-04 08:13:16 +01:00
James A. Fellows Yates
c515a401c7
Update shh.config 2021-02-04 08:06:35 +01:00
James A. Fellows Yates
82fe8a04be
Update shh.config 2021-02-04 08:02:33 +01:00
James A. Fellows Yates
e7ac0bae13
Update shh.config 2021-02-04 08:00:57 +01:00
James A. Fellows Yates
eb725f9ea3
Update shh.config 2021-02-03 20:13:09 +01:00
Charles Plessy
1608b36dcf Institutional profile for Okinawa Institute of Science and Technology 2021-02-02 17:40:10 +09:00
Thiseas C. Lamnidis
713a032a36
Add debug profile
which deactivates cleanup of workdir after successful run
2021-01-26 15:08:21 +01:00
James A. Fellows Yates
26d164ca74
Remove ceh profile for now 2021-01-21 13:15:08 +01:00
Åshild J. Vågene
594985f1ee
Update and rename ceh.config to seg_globe.config 2021-01-21 11:43:34 +01:00
Åshild J. Vågene
8fa720b9cc
Update conf/ceh.config
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2021-01-21 11:15:06 +01:00
Åshild J. Vågene
f8973f153a
Update ceh.config 2021-01-21 00:31:49 +01:00
Åshild J. Vågene
91594dffea
Update ceh.config 2021-01-21 00:29:43 +01:00
Åshild J. Vågene
c11c26f15f
Create ceh.config 2021-01-20 23:45:26 +01:00
James A. Fellows Yates
1c25cb033b
Add big_data profile 2021-01-19 13:53:01 +01:00
rbpisupati
9b5ac5c89d added anaconda module for cbe 2021-01-15 12:55:46 +01:00
James A. Fellows Yates
a4c55b3ea9
Fix time limit 0-9 typo 2021-01-06 10:44:12 +01:00
Combiz Khozoie
17cf4e3b35 fixed indents 2020-12-18 15:34:56 +00:00
Combiz Khozoie
3824403b4e removed workDir from Imperial configs 2020-12-18 10:31:36 +00:00
Combiz Khozoie
a61992d144 Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO 2020-12-18 10:21:26 +00:00
marcel-keller
c9ceaff3b3
change of directory for conda environments
change of directory due to recent changes in our infrastructure
2020-12-09 15:11:21 +02:00
emnilsson
8cc2fc5ecb
Merge pull request #193 from emnilsson/master
Modified ampliseq-specific uppmax-config
2020-12-02 13:40:43 +01:00
Alexander Peltzer
99985c658f
Merge pull request #194 from marcel-keller/ebc
Update ebc.config
2020-11-26 14:12:33 +01:00
marcel-keller
5590a9743a
Update ebc.config
queueSize to 64
2020-11-26 15:05:25 +02:00
Emelie Nilsso
febf38dd8e Removed an old process so that only relevant processes are included 2020-11-26 13:38:47 +01:00
Emelie Nilsso
d61ed01d2d Updated process names according to ampliseq main.nf 2020-11-25 17:50:30 +01:00
Emelie Nilsso
37e7cfae2c Removed unnecessary code that was used to troubleshoot 2020-11-24 07:14:23 +01:00
Emelie Nilsso
cd59bba83e Merge branch 'master' of https://github.com/nf-core/configs 2020-11-24 07:10:05 +01:00
Emelie Nilsso
c47088cda2 Merge remote-tracking branch 'origin' 2020-11-23 21:34:08 +01:00
Emelie Nilsso
2ea06ffab8 Modified uppmax and ampliseq specific config to fit with the divided preparation of the database 2020-11-23 21:20:36 +01:00
Thiseas C. Lamnidis
71d1ff2226
Add params block to sdag queue
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2020-11-18 13:04:46 +01:00
Thiseas C. Lamnidis
da781907f2
Move sdag queue specification block in sdag profile 2020-11-17 19:45:06 +01:00
Maxime Borry
c95fd9d52f
Merge pull request #186 from jfy133/shh-singularity-runoptions
Remove custom singularity runOptions from SHH config
2020-11-10 15:39:40 +01:00
James A. Fellows Yates
9d4d682867
Update shh.config 2020-11-10 15:14:03 +01:00
Gisela Gabernet Garriga
885f0ce5f6 awsbatch config update 2020-11-09 22:41:38 +01:00
lecorguille
90d1f9072b Add ABiMS - autoMounts = false 2020-10-22 18:18:55 +02:00
lecorguille
a63ca751ee Add ABiMS 2020-10-22 16:57:41 +02:00
James A. Fellows Yates
804f53c58c
Merge pull request #178 from jfy133/master
Add Max Planck Computing and Data Facility Cobra/Raven Clusters
2020-10-22 13:34:11 +02:00
James A. Fellows Yates
3995057d7f
Update mpcdf.config 2020-10-22 10:42:46 +02:00
James A. Fellows Yates
05deeca2d6
Update mpcdf.config 2020-10-15 14:22:35 +02:00
James A. Fellows Yates
e26c22b2f1
Update shh.config 2020-09-29 14:03:35 +02:00
MaxUlysse
2ccbdd3367 update params to latest version 2020-09-28 13:59:42 +02:00
MaxUlysse
8c0cc4b9ec code polishing 2020-09-25 09:57:50 +02:00
MaxUlysse
81f910cc95 add specific BamQC config 2020-09-25 09:49:43 +02:00
MaxUlysse
fbe7bd133a update uppmax specific sarek config 2020-09-25 08:33:53 +02:00
James A. Fellows Yates
11f1fb71db
Update mpcdf.config 2020-09-16 10:21:58 +02:00
James A. Fellows Yates
bbbdd3cb0f
Update mpcdf.config 2020-09-16 10:21:42 +02:00
James A. Fellows Yates
5b3492d240
Update mpcdf.config 2020-09-16 10:21:26 +02:00
James A. Fellows Yates
3115963b3e
Update mpcdf.config 2020-09-15 19:53:27 +02:00
James A. Fellows Yates
c6f7573d01
Update mpcdf.config 2020-09-15 17:48:54 +02:00
James A. Fellows Yates
bf87ec24e7
Update mpcdf.config 2020-09-15 17:45:38 +02:00
Edmund Miller
2c06019d89
fix(utd): Add check for less than 12 cpu 2020-09-13 20:46:14 -05:00
Edmund Miller
dc2735207e
feat(utd): add Kim queue 2020-09-13 20:46:10 -05:00
James A. Fellows Yates
3b7902d11b
Mad multi-core increase CPUs on retry 2020-09-06 08:23:35 +02:00
James A. Fellows Yates
4335e5deb7
Update mpcdf.config 2020-09-04 20:17:09 +02:00
James A. Fellows Yates
b4e275c3b9
Add MPCDF for EAGER 2020-09-04 19:57:25 +02:00
James A. Fellows Yates
5c7ab234b6
Create mpcdf.config 2020-09-04 19:55:40 +02:00
James A. Fellows Yates
0a685c1cc2
Update mpcdf.config 2020-09-03 20:24:11 +02:00
James A. Fellows Yates
42a1a15970
Create mpcdf.config 2020-09-03 20:11:56 +02:00
James A. Fellows Yates
c3fa87e4bc
Add microbiome screening profile for NT sized MALT runs for nf-core/eager@SHH 2020-08-11 09:18:36 +02:00
drpatelh
b804076959 Remove hard Singularity version 2020-08-03 11:38:10 +01:00
maxibor
69a0bd572b add temporary CDAG setting for SHH config 2020-07-23 15:38:28 +02:00
James A. Fellows Yates
d38ffc289b
Merge pull request #173 from jfy133/shh-eager-hops-update
Remove now deprecated EAGER flag for HOPS profile
2020-07-20 11:34:49 +02:00
James A. Fellows Yates
57ac9257a9
Remove now deprecated EAGER flag for HOPS profile 2020-07-20 11:29:12 +02:00
Alexander Peltzer
a498e98342
Merge pull request #170 from jfy133/master
Make walltimes more sophisticated and add a HOPS profile for nf-core/eager @ SHH
2020-07-15 15:11:24 +02:00
James A. Fellows Yates
84e03b8264
Re-bump default walltimes after debugging/testing 2020-07-11 18:31:04 +02:00
James A. Fellows Yates
8f6409d144
Remove min support percent value to avoid confusion 2020-07-08 15:26:19 +02:00
James A. Fellows Yates
1af9ce293c
Update hops profile based on requests from pathogen group 2020-07-08 15:22:33 +02:00
James A. Fellows Yates
c57a404f18
Add desc for hops 2020-07-08 10:45:43 +02:00
jfy133
15dad7e2e7 Add caveats for EAGER @ SHH profiles 2020-07-08 09:47:03 +02:00
jfy133
926c14f7ee Cleverer process time submission 2020-07-08 09:36:56 +02:00
jfy133
563c27e1bb Try again to get better time resource submission 2020-07-08 09:36:28 +02:00
James A. Fellows Yates
c6905b609e
Update shh.config 2020-07-08 09:25:21 +02:00
James A. Fellows Yates
b360ce26bc
Update shh.config 2020-07-08 09:24:06 +02:00
James A. Fellows Yates
31edb4b5d7
Update shh.config 2020-07-08 09:20:00 +02:00
James A. Fellows Yates
aac3478e86
Add better task time values to account for large data 2020-07-08 09:12:11 +02:00
James A. Fellows Yates
737d826932
Update shh.config 2020-07-08 08:36:04 +02:00
piotr-faba-ardigen
ba24f1a1c8
Merge pull request #168 from piotr-faba-ardigen/add_bi_config
Fix bi config
2020-07-07 14:56:43 +02:00
James A. Fellows Yates
fcdbeaa446
Merge branch 'master' into master 2020-07-07 14:34:10 +02:00
James A. Fellows Yates
af01fccba1
Add a HOPS profile for nf-core/eager @ SHH 2020-07-07 14:31:11 +02:00
Piotr Faba
cb7a6f756a reduce complexity 2020-07-07 13:48:28 +02:00
James A. Fellows Yates
5517d2cbe0
Remove default non-profile bwa parameters from eager profile
I realised today this is dangerous as these would not necessarily be reported if a user doesn't understand the profiles. Therefore removing these so nf-core/eager defaults are always used unless a specific profile (which would be described in the command itself) is explicitly named.
2020-07-07 13:29:13 +02:00
Piotr Faba
4181184f58 fix spaces 2020-07-02 22:00:37 +02:00
Piotr Faba
4828e78708 fix error introduced earlier 2020-07-02 21:57:44 +02:00
James A. Fellows Yates
530da4d8c0
Merge pull request #167 from jfy133/master
Bump number of eager @shh retries to account for deep sequencing data
2020-06-30 11:33:29 +02:00
James A. Fellows Yates
c52428cd72
Bump number of eager @shh retries to account for deep sequencing data 2020-06-30 08:19:25 +02:00
Adrian
e375ad97ad reverting autoMounts due to bug 2020-06-26 13:39:37 +01:00
Phil Ewels
28027a8489 Prince config - use function to check if env SCRATCH is set 2020-06-26 14:22:32 +02:00
Phil Ewels
cd9fbb22dc
Merge pull request #161 from ewels/uct_hpc
Update UCT hex -> hpc
2020-06-22 09:18:43 +02:00
Alexander Peltzer
7774a6a8f3
Merge pull request #163 from piotr-faba-ardigen/add_bi_config
resolve  #162 bug
2020-06-19 08:57:44 +02:00
Piotr Faba
cb26bef3f3 resolve #162 bug 2020-06-18 20:30:05 +02:00
Phil Ewels
53e118210f Copy over HPC config 2020-06-17 15:20:22 +02:00
Phil Ewels
dbfcd7c5e9 Rename uct_hex > uct_hpc 2020-06-17 15:17:22 +02:00
Phil Ewels
17824d2d62 Merge czbiohub_aws_highpriority profile into czbiohub_aws 2020-06-16 15:20:39 +02:00
phue
6d356cc918 CBE: don't load singularity module
singularity is now installed from CentOS repos, the environment module will be removed
2020-06-05 12:07:26 +02:00
Alexander Peltzer
f877644059
Merge branch 'master' into master 2020-05-29 11:43:47 +02:00
Alexander Peltzer
32ec230098
Merge pull request #156 from piotr-faba-ardigen/add_bi_config
Add bi config
2020-05-27 21:03:15 +02:00
Piotr Faba
f139750bf4 print the error message before throwing Exception 2020-05-27 19:14:43 +02:00
Piotr Faba
3c695ba71c test error display 2020-05-27 18:00:47 +02:00
Alexander Peltzer
6011419454
Merge pull request #154 from jfy133/master
Update SHH nf-core/eager group-specific profiles
2020-05-27 17:52:09 +02:00
Piotr Faba
18d8edb046 add description and profile 2020-05-27 17:41:19 +02:00
Piotr Faba
66f191a1cf declate NXF_GLOBAL_CONFIG in ci 2020-05-27 16:30:00 +02:00
Piotr Faba
2685275952 switch include off 2020-05-27 16:24:47 +02:00
Piotr Faba
c31b03108c retry without Exception 2020-05-27 16:22:56 +02:00
Piotr Faba
1354ae4063 add bi config 2020-05-27 16:19:15 +02:00
James A. Fellows Yates
d070ed70d1
Update BWA settings based on feedback 2020-05-26 11:11:42 +02:00
James A. Fellows Yates
e31e781f29
Remove debugging 2020-05-26 11:07:06 +02:00
Harshil Patel
5981e5ec27
Merge pull request #153 from FriederikeHanssen/cfc_scratch
Add scratch = true to avoid writing of intermediate file to /tmp
2020-05-22 15:48:00 +01:00
James A. Fellows Yates
ff915ee504
Update shh.config 2020-05-12 12:47:59 +02:00
James A. Fellows Yates
8225e07819
Condensed base params and added names for debugging 2020-05-12 12:47:25 +02:00
James A. Fellows Yates
4814bac1c3
Fix sub-profiles 2020-05-12 12:42:42 +02:00
James A. Fellows Yates
38e9e54932
Merge pull request #151 from jfy133/master
Add additional custom nf-core/eager params for SHH profile
2020-05-07 09:25:02 +02:00
James A. Fellows Yates
cf6e697f0b
Further update aln based on modifications of EAGER defaults 2020-05-07 09:16:08 +02:00
James A. Fellows Yates
d42d7f4146
Sets the bwa aln parameter to 0.01 which is more commonly used at SHH 2020-05-04 21:02:16 +02:00
FriederikeHanssen
d6813d9c39 Add scratch = true to avoid writing of intermediate file to /tmp 2020-05-04 17:09:43 +02:00
MaxUlysse
e6f4d58fa6 update rnafusion munin specific config 2020-04-28 17:06:04 +02:00
Adrian
ad12bd4ad1 testing automounts 2020-04-28 16:03:06 +01:00
Harshil Patel
2300d5a962
Update genomes.config 2020-04-09 18:22:41 +01:00
MaxUlysse
50a44d037b better docs and organisation of giles 2020-04-09 17:02:36 +02:00
Maxime Garcia
34dc18faf6
Update uppmax.config 2020-04-09 11:35:37 +02:00
Adrian Larkeryd
405801638a icr_davros sarek config description 2020-04-08 11:56:17 +01:00
Adrian Larkeryd
78be4b358e icr_davros igenomes base 2020-04-08 11:55:16 +01:00
Maxime Garcia
d1ff87a416
Merge pull request #145 from bioatlas/master
Adding UPPMAX specific config for ampliseq
2020-03-31 15:46:21 +02:00
Daniel Lundin
c8de9be701 Adding UPPMAX specific config for ampliseq 2020-03-31 15:17:24 +02:00
MaxUlysse
db2dd4458b Merge remote-tracking branch 'upstream/master' into UPPMAX 2020-03-30 16:41:08 +02:00
MaxUlysse
8b570507cd update s 2020-03-30 16:40:11 +02:00
ggabernet
c81f693f73 add cfc_dev config 2020-03-23 17:16:34 +01:00
Olga Botvinnik
52369ba6ad
Add AaegL5.0 config 2020-03-17 16:45:20 -07:00
Maxime Garcia
123132d89a
Update munin.config
fix typo
2020-03-12 17:23:55 +01:00
Phil Ewels
5a3bdcca5b
Merge pull request #139 from Emiller88/utd
fix(ganymede): use singularity/2.4.5
2020-03-11 16:54:01 +00:00
Maxime Garcia
b6d52fdb89
Update conf/pipeline/sarek/munin.config 2020-03-11 15:48:29 +01:00
Maxime Garcia
0f34d757a9
Update munin.config 2020-03-11 15:48:17 +01:00
MaxUlysse
d24a296a01 add munin/rnafusion specific config 2020-03-11 14:02:01 +01:00
MaxUlysse
dd1ddf864b update sarek munin config 2020-03-11 14:01:28 +01:00
Edmund Miller
cece853663
fix(ganymede): use singularity/2.4.5
Our 3.2.1 doesn't work right with snakemake or nextflow
2020-03-10 21:03:24 -05:00
Edmund Miller
c42bb07981
fix: Singularity => singularity
For some reason ours are lowercase
2020-03-10 09:55:17 -05:00
Edmund Miller
123c44c56d
feat: add initial ganymede config 2020-03-09 16:18:41 -05:00
marcel-keller
8e3803e4d7
Update ebc.config 2020-03-09 16:57:45 +02:00
marcel-keller
c00bbe982b
Update ebc.config 2020-03-09 16:51:38 +02:00
marcel-keller
3b57519500
Update ebc.config 2020-03-09 16:48:50 +02:00
marcel-keller
de914e56ee
Create ebc.config 2020-03-09 16:08:01 +02:00
Evan Floden
d8ad376f71
Merge branch 'master' into master 2020-03-06 10:29:50 +00:00
Alexander Peltzer
59a787b179
Merge pull request #122 from marchoeppner/ccga-config
Removing old CCGA profile from docs and linting
2020-03-06 11:17:08 +01:00
mseybold
52842de88b
Update cfc.config
test failed, so added the the default queue
2020-03-06 10:46:37 +01:00
mseybold
8e42bbd7d0
Update cfc.config
We just added some new HighMem nodes to the cfc, Partition/queue name is qbic, each node has 128Cores and 2TB of RAM.
The old queue (Name compute) is set to default by slurm.
Each process over 60GB of RAM or over 20cpus should run on those new nodes.
So added the queue State and adjusted the max_memory and max_cpu setting.
2020-03-06 10:25:08 +01:00
Evan Floden
8a9d3ad8a0 First commit of Google Cloud config 2020-03-06 05:47:29 +00:00
phue
e2e4dd05d3 cbe: move container cache to different filesystem
this is a workaround for squashfs errors that occur when containers are run from beeGFS
2020-03-05 16:34:20 +01:00
Adrian Larkeryd
a67e77bb57 put comments back in correct format 2020-03-05 10:42:18 +00:00
Adrian Larkeryd
46223a3dbb remove comments 2020-03-05 10:39:19 +00:00
Adrian Larkeryd
ead67d1e90 description and contact 2020-03-05 09:24:10 +00:00
Adrian Larkeryd
a882b6cbaa adding icr_davros config files generic and sarek 2020-03-04 15:00:33 +00:00
James A. Fellows Yates
41a45187fa
Experiment to see if 'cleanup = true' works as expected 2020-03-03 16:47:49 +01:00
Maxime Garcia
9a8bb12020
Update conf/pipeline/sarek/uppmax.config 2020-02-27 17:22:03 +01:00
Maxime Garcia
8acbdacf03
Update conf/pipeline/sarek/uppmax.config
Co-Authored-By: Johannes Alneberg <johannes.alneberg@scilifelab.se>
2020-02-27 17:21:03 +01:00
Maxime Garcia
09ff8f5790
Update conf/pipeline/sarek/uppmax.config 2020-02-27 17:02:31 +01:00
Maxime Garcia
17d6a7e922
Update conf/pipeline/sarek/uppmax.config 2020-02-27 17:02:13 +01:00
Maxime Garcia
ab8998e12b
Update uppmax.config 2020-02-27 16:52:51 +01:00
MaxUlysse
a8d338d2aa Merge branch 'Uppmax' of github.com:MaxUlysse/nf-core_configs into Uppmax 2020-02-24 14:37:27 +01:00
MaxUlysse
9f74e88041 update file 2020-02-24 14:36:45 +01:00
Marc Hoeppner
6c5a5c8bcb Removing old CCGA profile from docs and linting
Removing CCGA profile from master config

Removing CCGA profile from master config
2020-02-24 12:16:33 +01:00
Maxime Garcia
9b897345da
Update conf/pipeline/sarek/uppmax.config
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
2020-02-21 08:16:31 +01:00
Maxime Garcia
08e2804b37
Merge branch 'master' into Uppmax 2020-02-20 17:18:46 +01:00
MaxUlysse
aa905cd645 add UPPMAX specific sarek config 2020-02-20 17:14:18 +01:00
Daniel Straub
744db30da4
Update binac.config
This is now close to optimal I think.
2020-02-19 11:27:02 +01:00
marchoeppner
0830203b70 Adding new CCGA Med Cluster to profiles
Updating README and fixing linting errors in CCGA_MED profile

Fixing order in profile queue and removed leading slash from readme for ccga profile docs

Fixing order in profile queue and removed leading slash from readme for ccga profile docs
2020-02-11 11:12:51 +01:00
Daniel Straub
b7be65a31e
Cleanup config 2020-02-07 14:53:43 +01:00
Daniel Straub
7346bffdc8
Update binac.config
Processes that ask for 128 Gb are queuing forever when on short queue, but executed when send to smp queue.
2020-01-28 08:48:34 +01:00
James A. Fellows Yates
638758423a
Restricts MALT re-tries and hardcodes resources so cannot go above SDAG max 2019-12-21 20:55:54 +01:00
drpatelh
67c231d05c Change igenomes path 2019-12-18 10:54:23 +00:00
drpatelh
089b5b8e3b Update config 2019-12-12 13:44:37 +00:00
drpatelh
65c5668568 Update config 2019-12-12 13:02:44 +00:00
Maxime Garcia
d36172d4cf
Merge pull request #110 from MaxUlysse/MUNIN
fix issue with withLabel selector
2019-12-12 13:03:23 +01:00
MaxUlysse
2bf66514c5 fix issue with withLabel selector 2019-12-12 11:50:10 +01:00
Alexander Peltzer
a6d08ed646
Adjust custom pipeline config for ampliseq on BINAC 2019-12-11 16:09:44 +01:00
Alexander Peltzer
49cd35918a
Remove whitespace 2019-12-11 15:59:58 +01:00
Alexander Peltzer
5e6981d0ee
Export TZ in binac config 2019-12-11 15:59:25 +01:00
Alexander Peltzer
ac90acf470
Update envWhiteList for Binac Profile for testing purposes
Add envWhitelist for TZ to fix https://github.com/nf-core/ampliseq/issues/114
2019-12-11 14:26:57 +01:00
James A. Fellows Yates
0beb98696f
Merge branch 'master' into master 2019-12-06 19:31:24 +01:00
James A. Fellows Yates
8747be8120
More tweaks, nextflow appears to add a little extra? 2019-12-06 19:27:16 +01:00
James A. Fellows Yates
5c6760b2f0
Tweak back again 2019-12-06 19:25:07 +01:00
James A. Fellows Yates
46f6d20a77
Put parameters back to correct levels 2019-12-06 19:13:29 +01:00
James A. Fellows Yates
18931763fa
Add space? 2019-12-06 19:11:08 +01:00
James A. Fellows Yates
f59443daf0
Update shh.config 2019-12-06 19:09:20 +01:00
James A. Fellows Yates
1ab1370872
Try to make resources satisfiable 2019-12-06 19:06:05 +01:00
James A. Fellows Yates
6e596d1730
Fix stupid wrong bracket typo -.- 2019-12-06 18:37:39 +01:00
James A. Fellows Yates
b28e1a0905
Wrong bracket typo fix -.- 2019-12-06 18:34:18 +01:00
Alexander Peltzer
1f7940c2ee
Merge pull request #104 from jfy133/master
Attempt to fix process specific configs with pipeline specific configs
2019-12-06 17:16:37 +01:00
jfy133
e8b4675692 Cleanup and tweaking 2019-12-06 13:17:31 +01:00
Maxime Garcia
9497b78149
Merge pull request #100 from MaxUlysse/UPPMAX
Improve UPPMAX configs
2019-12-06 10:52:44 +01:00
Maxime Garcia
14864bb80b
Update conf/uppmax.config 2019-12-06 10:31:56 +01:00
Alexander Peltzer
da547b4ce3
Merge pull request #102 from phue/cbe_singularity
cbe: load singularity/3.4.1
2019-12-06 10:21:55 +01:00
James A. Fellows Yates
0033b74e4e
Update shh.config 2019-12-05 18:08:39 +01:00
James A. Fellows Yates
dc0f1dfb40
Update shh.config 2019-12-05 17:58:49 +01:00
James A. Fellows Yates
b1a8b45aa0
Maybe typo? 2019-12-05 17:52:53 +01:00
jfy133
731372dac2 Added SHH specific EAGER configuration 2019-12-05 17:01:10 +01:00
phue
381c60e7b7 cbe: load singularity/3.4.1 2019-12-05 16:06:32 +01:00
MaxUlysse
a63ec24626 Merge branch 'UPPMAX' of github.com:MaxUlysse/nf-core_configs into UPPMAX 2019-12-05 15:18:04 +01:00
MaxUlysse
99afe86ea9 update docs 2019-12-05 15:18:01 +01:00
MaxUlysse
f41d325873 automatic configs work on all nodes 2019-12-05 15:07:59 +01:00
Maxime Garcia
78826c9d4e
Merge branch 'master' into UPPMAX 2019-12-05 12:52:34 +01:00
Alexander Peltzer
9cdb915efb
Merge pull request #101 from jfy133/master
Condensing SHH profile(s) with sub-profiles
2019-12-05 12:51:31 +01:00
MaxUlysse
cf6e00d9f5 better match for hostname 2019-12-05 12:46:32 +01:00
MaxUlysse
20e451be3b actually define hostname 2019-12-05 12:45:30 +01:00
MaxUlysse
0211b33a55 trying automatic configuration based on hostname 2019-12-05 12:41:18 +01:00
James A. Fellows Yates
842642a2bb
Apply suggestions from code review
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
2019-12-05 12:23:36 +01:00
James A. Fellows Yates
678a3841b6
Update conf/shh.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
2019-12-05 12:23:06 +01:00
jfy133
54dafbcfa3 Condensing SHH profiles following https://github.com/nf-core/configs/pull/100 2019-12-05 12:09:11 +01:00
MaxUlysse
cdbdbee0eb replace -profile uppmax_devel by -profile uppmax,devel 2019-12-05 11:49:44 +01:00
Sabrina Krakau
2eed8f7429 Lowered max. memory for cfc 2019-11-28 12:49:02 +01:00
Olga Botvinnik
f57e00e87d
Set awsqueue parameter properly 2019-11-27 15:57:09 -08:00
Alexander Peltzer
4f77eae5cf
Mini adjustment for highmem queue on denbi 2019-11-27 14:23:01 +01:00
Maxime Garcia
2669401a72
Merge branch 'master' into sarek 2019-11-27 13:27:43 +01:00
Alexander Peltzer
5e0e3e0567
Merge pull request #96 from jfy133/master
Splitting SHH config to one per cluster
2019-11-27 12:06:54 +01:00
Alexander Peltzer
54719c4761
Merge pull request #95 from ggabernet/master
Update max memory for cfc profile
2019-11-26 21:21:07 +01:00
James A. Fellows Yates
c725c71e4d
Merge branch 'master' into master 2019-11-26 20:34:42 +01:00
jfy133
6f40c13473 Split shh config for each cluster 2019-11-26 20:20:17 +01:00
phue
88b5be3060 Merge branch 'master' of https://github.com/nf-core/configs into cbe_iGenomes 2019-11-26 18:08:43 +01:00
ggabernet
834f4b4179 updated memory cfc config 2019-11-26 17:30:41 +01:00
Alexander Peltzer
ee99d7f2d4
Merge pull request #94 from apeltzer/master
Mini Cosmetic Fixes for README
2019-11-26 16:24:30 +01:00
Alexander Peltzer
b756ce54a4
Add genotoul fix 2019-11-26 16:09:08 +01:00
Alexander Peltzer
81739a3907
Merge pull request #93 from jfy133/master
Updated max resources for SHH SDAG
2019-11-26 15:56:39 +01:00
James A. Fellows Yates
c3d27099ca
Updated authors 2019-11-26 15:26:05 +01:00
James A. Fellows Yates
ca6ddcadb0
Matching max CPUs to SDAG (supercruncher8) 2019-11-26 15:25:35 +01:00
MaxUlysse
6f638b7ad4 Merge branch 'sarek' of github.com:MaxUlysse/nf-core_configs into sarek 2019-11-26 15:22:02 +01:00
MaxUlysse
25f3bd68f8 container = null 2019-11-26 15:21:53 +01:00
Alexander Peltzer
5c39c1ed1a
Merge branch 'master' into master 2019-11-26 15:07:31 +01:00
Noirot Céline
611c318569
Update conf/genotoul.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
2019-11-26 14:50:05 +01:00
Noirot Céline
dd4ff452da
Update conf/genotoul.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
2019-11-26 14:49:47 +01:00
Alexander Peltzer
37c6714cc7
Nice prince 2019-11-26 14:29:52 +01:00
phue
bdf4a829b8 roll out iGenomes on cbe 2019-11-26 14:22:16 +01:00
Alexander Peltzer
23f9fd2d73
Merge branch 'master' into master 2019-11-26 14:20:36 +01:00
Maxime Garcia
68c709432f
Apply suggestions from code review
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
2019-11-26 14:17:32 +01:00
Alexander Peltzer
d592c79954
Merge branch 'master' into master 2019-11-26 13:59:06 +01:00
MaxUlysse
ebdfc2a768 fix container/module collision 2019-11-26 11:59:00 +01:00
Maxime Garcia
880551d246 Apply suggestions from code review 2019-11-26 11:58:13 +01:00
Maxime Garcia
f6c2e4c65f Update docs/pipeline/sarek/munin.md
Update conf/pipeline/sarek/munin.config

testing out module and containers collision
2019-11-26 11:57:51 +01:00
Maxime Garcia
9d23f7a266 Update conf/pipeline/sarek/munin.config 2019-11-26 11:56:02 +01:00
MaxUlysse
45cec1ac2f Add specific sarek config base, munin specific sarek config and docs
rename file

improve configs

remove unnecessary params
2019-11-26 11:52:53 +01:00
MaxUlysse
028008c1d0 improve syntax 2019-11-26 11:48:29 +01:00
Maxime Garcia
93d5156c7d Update conf/munin.config 2019-11-26 11:48:29 +01:00
MaxUlysse
e98f74e47b actually belong to nf-core/configs/munin 2019-11-26 11:48:29 +01:00
MaxUlysse
edde1ee64d fix container/module collision 2019-11-26 11:48:29 +01:00
Maxime Garcia
9a57e487d7 Apply suggestions from code review 2019-11-26 11:48:29 +01:00
Maxime Garcia
b029ccaa59 Update docs/pipeline/sarek/munin.md
Update conf/pipeline/sarek/munin.config
2019-11-26 11:48:11 +01:00
Maxime Garcia
73047968cf Update conf/pipeline/sarek/munin.config 2019-11-26 11:25:29 +01:00
MaxUlysse
cd1d0b5f8f Add specific sarek config base, munin specific sarek config and docs
rename file

improve configs

remove unnecessary params
2019-11-26 11:25:29 +01:00
Maxime Garcia
1ce8ce0c55
Apply suggestions from code review 2019-11-26 11:00:24 +01:00
MaxUlysse
75c1fd5cd9 fix tests 2019-11-26 10:43:23 +01:00
Alexander Peltzer
b60fa8109e
Shift some configs to params scope 2019-11-26 00:57:10 +01:00
Noirot Céline
ed4436c1a6
Merge branch 'master' into master 2019-11-25 16:24:12 +01:00
noirot
db51c49b2f Add genotoul config 2019-11-25 14:54:25 +01:00
MaxUlysse
08a6b74825 add new profile to be shared: awsbatch 2019-11-19 14:16:06 +01:00
Alexander Peltzer
bc9ecf50ac
Update binac.config
Upgrade to 3.4.2
2019-11-11 13:56:17 +01:00
Alexander Peltzer
e66ca6f670
Merge pull request #83 from nf-core/cfc_new_singularity_test
Update Singularity to 3.4.2 on CFC
2019-11-11 13:55:01 +01:00
Alexander Peltzer
d2603a134e
Add in denbi cloud configs 2019-11-11 12:26:19 +01:00
Alexander Peltzer
426017d727
Merge remote-tracking branch 'upstream/master' 2019-11-11 12:21:53 +01:00
Alexander Peltzer
16a0ba9fd5
Update cfc.config 2019-11-08 10:06:23 +01:00
phue
5a9dbe5d7c MENDEL is no more
the cluster is no longer operational, was replaced by CBE
2019-10-28 14:11:34 +01:00
Alexander Peltzer
eb6d23254d
Fix binac resources 2019-10-28 13:22:12 +01:00
Alexander Peltzer
e557ced184
Update max memory 2019-10-28 13:21:41 +01:00
Alexander Peltzer
06bd1ab79e
Merge branch 'master' into master 2019-10-28 13:21:08 +01:00
Alexander Peltzer
41e607e7f9
Fix expression 2019-10-28 13:17:39 +01:00
Alexander Peltzer
494aa8b53e
Mini fix 2019-10-28 13:15:54 +01:00
Alexander Peltzer
5348b8c609
Revert "BINAC SMP / Short / Long Updates" 2019-10-28 13:12:31 +01:00
Alexander Peltzer
7951805fbf
Merge pull request #43 from apeltzer/master
BINAC SMP / Short / Long Updates
2019-10-28 13:09:56 +01:00
Alexander Peltzer
83fcc0b2ba
Adjust max memory 2019-10-28 13:09:30 +01:00
phue
18ed48f398 deprecate igenomesIgnore in favor of igenomes_ignore
keep both for now until all the pipelines have been synced
2019-10-28 11:38:24 +01:00
phue
123f199b68 cbe: dynamic qos logic 2019-10-27 20:44:08 +01:00
Alexander Peltzer
5ec19e3abb
Binac SMP / Long / Short Queue Additions 2019-10-27 13:28:00 +01:00
Maxime Borry
834601f05b Merge branch 'master' of https://github.com/nf-core/configs 2019-10-25 15:52:23 +02:00
Maxime Borry
7a2fe44b43 resource based queuing 2019-10-25 15:50:49 +02:00
maxibor
5e54912ada add queue choice 2019-10-25 14:08:02 +02:00
Anthony Bretaudeau
1f2786c78f add genouest cluster 2019-10-16 18:15:04 +02:00
phue
9b3fda36f6 update singularity version
singularity/3.1.0 is not available anymore
2019-10-10 21:22:19 +02:00
Sven Fillinger
dc3faf8a5f Sends weblog messages over HTTPS 2019-10-10 12:56:39 +02:00
Sven Fillinger
855da0cee3 Refactors weblog url 2019-10-08 14:19:42 +02:00
Alexander Peltzer
ed8c9d9e7a
Update cfc.config 2019-10-08 13:20:58 +02:00
Alexander Peltzer
1e54d9510d
Update cfc.config 2019-10-08 13:15:49 +02:00
Alexander Peltzer
865909ac54
Update cfc.config 2019-10-08 13:14:21 +02:00
Alexander Peltzer
5fae33669d
Update cfc.config
Try this out 👍
2019-10-08 13:07:28 +02:00
Alexander Peltzer
4555dd7d36
Update conf/cfc.config 2019-10-08 12:51:01 +02:00
Alexander Peltzer
abb6780081
Add Singularity Cache Directory 2019-10-08 12:48:24 +02:00
phue
5e257e7e9a add cbe profile 2019-09-22 16:45:09 +02:00
Alexander Peltzer
836da97efd
Merge pull request #66 from marchoeppner/ccga-config
Updating CCGA configs - adding cache dir and mount points
2019-09-03 17:25:34 +02:00
marchoeppner
3b638e9ccd Fixing typo in ccga_dx config 2019-09-03 15:37:15 +02:00
Szilveszter Juhos
c3c0d088dd
typo 2019-08-16 11:13:32 +02:00
marchoeppner
486cdfce5f Updating CCGA configs - adding cache dir and mount points 2019-08-07 13:19:16 +02:00
MaxUlysse
4183090379 fix: reduce cpu and mem usage 2019-08-07 12:26:51 +02:00
MaxUlysse
23dd3dd098 Merge branch 'master' of github.com:MaxUlysse/nf-core_configs 2019-08-07 11:56:52 +02:00
MaxUlysse
0bd19517b3 fix: typos 2019-08-07 11:55:56 +02:00
Maxime Garcia
d6a763214c
Update conf/munin.config
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
2019-08-07 11:47:47 +02:00
Maxime Garcia
12fb2a60c5
Update conf/munin.config
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
2019-08-07 11:47:41 +02:00
MaxUlysse
332ba0dadb fix: update and rearrange munin configuration file and docs 2019-08-07 11:10:48 +02:00
Martin Proks
c583aa0233 Added kraken config (#15)
* Added kraken template
* docs: updated some info
* fix: updated igenomes_base path
2019-08-05 11:19:05 +02:00
drpatelh
e0c684ee8f Aarrrgh pulling configs from master 2019-07-31 23:39:42 +01:00
drpatelh
a692ded933 Remove workDir in czbiohub 2019-07-31 23:30:51 +01:00
drpatelh
daf1b9dcd2 Fix type in uppmax-devel 2019-07-31 22:09:30 +01:00
Remi Planel
1c0d596582 Merge remote-tracking branch 'upstream/master' 2019-07-30 16:15:20 +02:00
Remi Planel
b4cffe0455 Remove buggy cluster option 2019-07-30 15:15:07 +02:00
marchoeppner
b31db18dfb Adding config file for CCGA dx cluster 2019-07-29 12:08:07 +02:00
Remi Planel
fbb33fde63 Details 2019-07-24 11:43:08 +02:00
Remi Planel
1b30c5a4d2 Add the Pasteur profile 2019-07-24 11:32:02 +02:00
Alexander Peltzer
9106559b2f
Update cfc.config 2019-07-15 17:53:11 +02:00
Olga Botvinnik
474e98daaf
Merge branch 'master' into olgabot/czb-update 2019-07-09 16:02:25 -07:00
marchoeppner
cb507177d5 Updating CCGA config file 2019-07-05 08:03:37 +02:00
Olga Botvinnik
069963ff8a Make czbiohub_aws_highpriority only set the AWS Batch queue and nothing else 2019-07-03 16:01:47 -07:00
Olga Botvinnik
917ec0863d add default trimming 2019-07-03 16:01:03 -07:00
Alexander Peltzer
45d36a1506
Update cfc.config
Add Weblog for CFC cluster
2019-07-03 09:21:16 +02:00
Olga Botvinnik
6a2d2003f0 Add high priority AWS batch queue to CZBiohub AWS 2019-07-01 09:25:46 -07:00
Olga Botvinnik
70b5205d15 Add human salmon index and mouse star index 2019-06-27 15:02:47 -07:00
Olga Botvinnik
d1983f8acd Use new and improved GENCODE+ERCC annotation 2019-06-26 17:56:26 -07:00
Olga Botvinnik
b0c67e0a9b Add both seqCenter and seq_center 2019-06-24 17:52:10 -07:00
Olga Botvinnik
acad9ac7e5 Try to clean up czb update 2019-06-24 17:50:36 -07:00
Szilveszter Juhos
f40ed194e3 Using correct reference location for munin 2019-06-24 09:54:37 +02:00
James A. Fellows Yates
505af9a909
Merge pull request #49 from maxibor/master
Fix queuesize Ccope and Singularity
2019-06-18 20:36:36 +02:00
maxibor
c7eed3fa4c fix queuesize scope and singularity 2019-06-14 19:16:20 +02:00
Alexander Peltzer
ebe838ac7e
Merge pull request #45 from czbiohub/olgabot/czbiohub
[WIP] Add CZ Biohub
2019-06-06 13:35:34 +02:00
Olga Botvinnik
3a481402b8 Get czbiohub config to work 2019-06-05 14:42:07 -07:00
Tobias Schraink
4491907f14 updated singularity version in conf/prince.config to reflect version installed on prince
The prince admins changed the singularity version to 3.2.1 from 3.1.0, making the old version unavailable. To keep this config functional, I updated the version number for singularity.
2019-06-04 12:56:11 -04:00
Alexander Peltzer
515e9484de
Merge pull request #44 from drpatelh/dev
Add proper nf-core logo
2019-06-01 12:36:57 +02:00
Olga Botvinnik
9c0315addb Use flat nongzipped files 2019-05-31 13:17:48 -07:00
Olga Botvinnik
1b2fcf5a98 Add author lines 2019-05-31 08:16:51 -07:00
Olga Botvinnik
66eeeebe81 Initial commit of CZBiohub 2019-05-30 11:15:38 -07:00
Alexander Peltzer
441ddbcdab
Newest Update is 3.0.3 2019-05-28 15:25:10 +02:00
maxibor
de1b2aa7d2 remove autoformat added space 2019-04-25 15:50:48 +02:00
maxibor
efd831a8a3 add automounts for singularity 2019-04-25 15:48:20 +02:00
Alexander Peltzer
7d7c18273b
Merge pull request #41 from tobsecret/master
Added configs for NYU clusters BigPurple (NYU Med) and Prince (NYU main campus)

Last PR merge before Easter holiday ;-)
2019-04-19 00:13:49 +02:00
Tobias Schraink
4ba831705d added nyu prince and bigpurple md files, added singularity cacheDir to prince and bigpurple configs 2019-04-18 14:13:02 -04:00
maxibor
9d9ac4c3bb remove whitespace 2019-04-18 11:22:54 +02:00
maxibor
1772f4119c adding igenomes to shh config 2019-04-18 11:19:53 +02:00
Tobias Schraink
4a915e330a added warnings to run on SCRATCH 2019-04-17 17:15:16 -04:00
Tobias Schraink
51c2a54399 added nyu prince and bigpurple configs 2019-04-17 16:59:38 -04:00
maxibor
76a5fcf077 switch to queueSize 16 for shh config 2019-03-20 13:44:13 +01:00
maxibor
0929349303 add queueSize limited to 5 2019-03-18 11:13:11 +01:00
James A. Fellows Yates
ecb36dd8c2
Reduced memory and CPUs for cdag compatibility
Also matches 'fair use' policy
2019-03-14 21:26:43 +01:00
James A. Fellows Yates
3da1373c14
Updated path to centralised singularity cache 2019-03-14 21:16:02 +01:00
Harshil Patel
8bc975c8c3
Merge pull request #33 from ewels/master
Removed params.config_profile_name, added params.hostnames
2019-03-13 16:49:43 +00:00
Phil Ewels
1191863e1c Removed params.config_profile_name, added params.hostnames 2019-03-13 17:19:34 +01:00
phue
13df59bfaf remove singularity support
reasons:

* the kernel running on the compute nodes does not support overlayfs und thus containers downloaded from
  public registries won't run because they lack the /lustre mountpoint

* building containers manually using the Singularity file would work, however nf-core pipelines will stop
  providing these files in future releases
2019-03-12 17:57:31 +00:00
Alexander Peltzer
fbf9397182 Bump 2019-03-12 18:48:29 +01:00
Alexander Peltzer
3ee7195fa8 Central resource for both binac and cfc now 2019-03-12 14:58:41 +01:00
Alexander Peltzer
68b759d6ef Mini Update 2019-03-11 18:12:35 +01:00
Alexander Peltzer
f4f3c4e53b Roll out binac too 2019-03-11 14:29:42 +01:00
Alexander Peltzer
6b21538062 Rolling out iGenomes now 2019-03-07 16:12:30 +01:00
phue
59887d9bc8 update config for MENDEL cluster 2019-02-27 16:03:26 +00:00
Alexander Peltzer
164ae59568
Update cfc.config
Please use the newest singularity version 3.0.3!
2019-02-21 10:49:29 +01:00
Alexander Peltzer
d6ea834f40
Update cfc.config 2019-02-21 09:17:28 +01:00
Alexander Peltzer
637ffb782c
Fix CFC config 2019-02-19 17:03:53 +01:00
James A. Fellows Yates
7a51c684f5
Made small SLURM queue change for SHH 2019-01-21 20:31:37 +01:00
Martin Proks
7acd9cf7df
Updating suggested changes 2019-01-11 15:28:10 +01:00
Martin Proks
89dbb6c061
Setting Singularity as default method 2019-01-11 14:37:12 +01:00
Martin Proks
548c8bca3f
Updated munin doc and configuration 2019-01-10 15:46:16 +01:00
Martin Proks
f259178642
Added munin config boilerplate 2019-01-09 17:27:55 +01:00
Phil Ewels
66a08891c7 Documentation tweaks 2019-01-07 14:25:06 +01:00
Harshil Patel
59bc3b43be
Update crick.config 2019-01-07 11:35:49 +00:00
Harshil Patel
f81c67627e
Update crick.config 2019-01-07 11:18:01 +00:00
Alexander Peltzer
d4ea56aaae Update UCT_Hex profile 2019-01-07 12:14:04 +01:00
Alexander Peltzer
2b814041ee Add in both uppmax profiles 2019-01-04 16:33:54 +01:00
Alexander Peltzer
6f7a3cc422 Add Hebbe 2019-01-04 16:30:40 +01:00
Alexander Peltzer
e07d8bd687 Get rid of header in CRICK config 2019-01-04 16:29:49 +01:00
Alexander Peltzer
aca790bb4b Add CCGA Profile 2019-01-04 16:28:41 +01:00
Alexander Peltzer
7af6b48b4d Adjust general usage to separate params section 2019-01-04 14:55:22 +01:00
Alexander Peltzer
9c97680d4c Add UZH 2019-01-04 14:49:52 +01:00
Alexander Peltzer
bc8e05f4b3 Add Phoenix 2019-01-04 14:48:14 +01:00
Alexander Peltzer
6ae7d02b14 Add Mendel 2019-01-04 14:46:30 +01:00
Alexander Peltzer
078272745a Update BINAC, CFC, SHH COnfig profiles 2019-01-04 14:42:09 +01:00
Alexander Peltzer
87cea82c43 Use james github handle 2019-01-04 10:21:16 +01:00
Alexander Peltzer
a78fe147f0 Add more details on config profiles 2019-01-04 10:19:39 +01:00
Alexander Peltzer
1051339461 Remove base config stuff 2019-01-03 16:02:07 +01:00
Alexander Peltzer
98fca8a1ef Add SHH Configuration 2019-01-03 16:01:06 +01:00
phue
5c609859c5 add config for MENDEL cluster 2018-12-04 16:58:33 +01:00
Harshil Patel
ddc0bbd7b3
Update phoenix.config 2018-11-26 23:31:44 +00:00
Alexander Peltzer
42ed4b9da4 Add Phoenix configs 2018-11-27 00:02:40 +01:00
Harshil Patel
2c513e5266
Update binac.config 2018-11-26 22:47:36 +00:00
Phil Ewels
e38e9327f4 Some tidying 2018-11-26 17:32:06 +01:00
drpatelh
d52db66077 Added existing configs from all pipelines 2018-11-23 15:56:34 +00:00